The Australian e-Health Research Centre

Repositories

• pathling

  Turn your FHIR data set into a powerful API that can be used to develop analytics applications and augment data science workflow.

  spark analytics standards fhir terminology
  Java 4 19 45 17 Updated Jul 29, 2021

• COVID-sBeacon
  Python 1 6 4 7 Updated Jul 28, 2021

• isling

  A tool for detection of viral integrations
  Python 0 1 0 0 Updated Jul 27, 2021

• open-pedigree

  Forked from phenotips/open-pedigree

  A free and open-source pedigree tool by PhenoTips®
  JavaScript LGPL-2.1 5 0 0 0 Updated Jul 27, 2021

• BitEpi
  C++ 3 3 0 1 Updated Jul 27, 2021

• terraform-aws-serverless-beacon

  Implementation of Beacon in a serverless (FaaS) manner, to enable cheaper and more versatile (e.g. over distributed ) queries
  Python 1 1 0 0 Updated Jul 21, 2021

• INSIDER

  Detecting foreign inserted DNA segments in the genome
  Python 0 1 0 0 Updated Jul 15, 2021

• redmatch

  A rules-based transformation engine that allows exporting data in REDCap as FHIR resources.
  Java 0 2 14 0 Updated Jul 15, 2021

• fhir-tx-transforms

  Transformations of various code systems to FHIR.
  Java 1 1 0 2 Updated Jul 14, 2021

• item-715-data
  XSLT 0 0 0 0 Updated Jul 12, 2021

• semantic-search

  A deep learning based approach for semantic search over large clinical terminology system
  GPL-3.0 0 0 0 0 Updated Jul 5, 2021

• fhir-owl

  Transforms OWL ontologies into FHIR code systems.
  Java 5 9 0 0 Updated Jul 2, 2021

• Atlas

  Forked from OHDSI/Atlas

  ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
  JavaScript Apache-2.0 84 0 0 0 Updated Jul 1, 2021

• WebAPI

  Forked from OHDSI/WebAPI

  OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
  Java 104 0 0 0 Updated Jun 29, 2021

• primary-care-data-technical
  GLSL 0 2 25 0 Updated Jun 27, 2021

• fhir-claml

  Transforms ClaML classifications into FHIR code systems.
  Java 4 13 0 2 Updated May 20, 2021

• fhir-hgnc

  Transforms HGNC source files into FHIR code systems.
  Java 0 0 0 0 Updated May 16, 2021

• openmrs-module-terminologysearch

  A module for OpenMRS to search a FHIR terminology server for concepts.
  Java Apache-2.0 1 1 0 0 Updated May 10, 2021

• genclipr-fhir-ig

  FHIR implementation guide for the Genomics Clinical Picture Repository standard developed as part of the Standardised Clinical Phenotypes project in Australian Genomics.
  GLSL 0 1 0 0 Updated May 7, 2021

• release-validation-framework

  Forked from IHTSDO/release-validation-framework

  API for testing a SNOMED CT release as part of the release process.
  Java Apache-2.0 13 1 0 5 Updated May 7, 2021

• ontoserver-deploy

  Sample deployment project for Ontoserver
  Dockerfile Apache-2.0 4 12 0 0 Updated May 7, 2021

• redcap_simple_ontology_provider

  REDCap external module provides simple implementation of the ontology provider mechanism.
  PHP 0 2 2 0 Updated May 3, 2021

• VariantSpark

  machine learning for genomic variants

  emr aws bioinformatics gwas genome random-forest notebook
  JavaScript 37 103 61 1 Updated Apr 25, 2021

• labcodeset-fhir-transform

  Application which transforms Nederlandse Labcodeset from its native XML file format to a collection of FHIR terminology resources.

  fhir snomed loinc terminology ucum labcodeset
  Java 1 2 0 0 Updated Feb 22, 2021

• fhircap Archived

  FHIRCap is a tool designed to transform REDCap forms into FHIR resources.
  0 1 0 0 Updated Jan 25, 2021

• node-generate-release

  Forked from mrkmg/node-generate-release

  Generate a release for a project following semver using nodejs and gitflow
  TypeScript MIT 7 0 0 0 Updated Dec 20, 2020

• observatory

  Forked from dylang/observatory

  Beautiful UI for showing tasks running on the command line.
  JavaScript MIT 15 0 0 0 Updated Dec 20, 2020

• Mirorr

  Mirorr: Multimodal Image Registration using blOck-matching and Robust Regression
  C++ 10 23 1 0 Updated Nov 24, 2020

• redcap_pedigree_editor

  Redcap External Module to allow the entry of a pedigree diagram, storing the result as a FHIR resource
  PHP 0 1 0 0 Updated Nov 13, 2020

• ontology-core

  Internal model to represent ontologies and utilities to import ontologies from different formats.
  Java Apache-2.0 6 6 0 1 Updated Oct 13, 2020