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Jan 20, 2021 - Perl
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bacteria
Here are 118 public repositories matching this topic...
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
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Aug 15, 2021 - Python
Pan-genome wide association studies
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Oct 4, 2017 - Python
public-health
report
variant-calling
bacteria
fastq
phylogenomics
denovo-assembly
genotyping
resistome
virulome
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Aug 3, 2020 - Perl
Build a partitioned pangenome graph from microbial genomes
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Jun 28, 2021 - Python
Rapid & standardized annotation of bacterial genomes & plasmids
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Aug 12, 2021 - Python
SEER, reimplemented in python 🐍 🔮
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Jul 19, 2021 - Python
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
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Jul 28, 2021 - Python
PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
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Aug 12, 2021 - Python
A scalable bacterial genome assembly, annotation and analysis pipeline
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Jul 28, 2021 - Groovy
Accurate, resource-frugal and deterministic DNA sequence classifier.
bioinformatics
metagenomics
viruses
bwt
bacteria
k-mer
phylogeny
metagenomic-classification
taxonomic-classification
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Aug 12, 2021 - Python
viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
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Oct 15, 2018
Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.
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Aug 12, 2021 - Python
Identify phage regions in bacterial genomes for masking purposes
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Sep 5, 2019 - Perl
BACTpipe: An assembly and annotation pipeline for bacterial genomics
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Jul 2, 2021 - Groovy
Order and orientation of complete bacterial genomes
bioinformatics
genomics
assembly
python3
bioinformatics-pipeline
bacteria
complete
infectious-diseases
long-reads
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Jun 30, 2020 - Python
A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
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Sep 30, 2020 - Python
A comprehensive, compact, and automatically curated 16S database
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Nov 28, 2018 - Scala
A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.
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Aug 12, 2021
Simple counting of bacterial colonies from pictures of plates.
processing
image-processing
segmentation
counting
microbiology
bacteria
image-segmentation
bacterial-counts
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Mar 5, 2021 - Processing
Bacterial Epigenomics Analysis SuiTe
rna-seq
methylation
epigenetics
hgt
bacteria
differential-expression
unix-shell
recombination
tfbs-discovery
smrt
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May 4, 2020 - R
To detect bacterial trio in leaf using tensorflowlite implemented in Android
android
kotlin
learning
detection
kotlin-android
deep
bacteria
leaf-blight-detection
android-with-deep-learning
android-with-machine-learning
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Oct 14, 2020 - Kotlin
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Right below https://github.com/TIBHannover/BacDiveR/blob/master/R/retrieve_search_results.R#L14, the
queryURLshould be validated ("defensive programming") somehow. Maybe usingstringi::stri_startswith("https://bacdive.dsmz.de/advsearch?site=advsearch")and/orstringi::stri_endswith("&advsearch=search")?In either