Summary

Add basic pre-commit hooks to the repo. To catch, for example, broken symlinks (WorldHealthOrganization/app#1670)
Link: https://github.com/pre-commit/pre-commit-hooks

Possible config file. Should be run against every file in the existing tree to see what issues might come up.

# .pre-commit-config.yaml
-   repo: https://github.com/pre-commit/pre-comm

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Prerequisites

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Describe the bug
All "Add a Volunteer" data fields are mandatory. All fields should not be a requirement (in current design, particularly geographic information).

Some data fields (right now), such as administrative boundaries are very difficult to remember as text fields (e.g. regions, districts, village). Implies that when trying to rapidly add a volunteer, I am adding bogus informati

Inference of transmission tree from a dated phylogeny

https://cran.r-project.org/web/packages/TransPhylo/vignettes/infer.html