#
genomics
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DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
science
machine-learning
bioinformatics
deep-learning
genomics
genome
tensorflow
ngs
sequencing
dna
deep-neural-network
deepvariant
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Aug 9, 2021 - Python
A collaboratively written review paper on deep learning, genomics, and precision medicine
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Apr 23, 2021 - HTML
A versatile pairwise aligner for genomic and spliced nucleotide sequences
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Aug 14, 2021 - C
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
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Jul 21, 2021 - C
Data intensive science for everyone.
docker
science
workflow
bioinformatics
pipeline
genomics
workflow-engine
ngs
sequencing
dna
usegalaxy
hacktoberfest
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Aug 14, 2021 - Python
tools for working with genome variation graphs
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Aug 14, 2021 - C++
Python and C++ code for reading and writing genomics data.
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Jul 26, 2021 - C++
Scripts to download genomes from the NCBI FTP servers
python
bioinformatics
genomics
command-line
biology
genbank
ncbi-taxonomy
ncbi
refseq-genomes-belonging
bacterial-refseq-genomes
download-genomes
fungal-genomes
genbank-format
mick-scripts
older-versions
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Aug 5, 2021 - Python
java
bioinformatics
genomics
pdb
parser-library
protein-data-bank
protein-structure
protein-sequences
sequence-alignment
protein-modification
structure-alignment
structural-bioinformatics
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Aug 14, 2021 - Java
Python library to handle Gene Ontology (GO) terms
genomics
gene-ontology
bioinfomatics
gene-set-enrichment
sidak
fdr
goslim-terms
fisher-tests
fdr-benjamini
holm-sidak
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Jul 8, 2021 - Python
Python library to facilitate genome assembly, annotation, and comparative genomics
bioinformatics
genomics
assembly
blast
comparative-genomics
variant-calling
synteny
sequence-alignments
genome-sequencing
genetic-maps
allmaps
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Jul 22, 2021 - Python
C++ library and cmdline tools for parsing and manipulating VCF files
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May 27, 2021 - C++
keiranmraine
commented
Sep 28, 2016
Is this on anyone's radar? I know it's a simple item to add directly
A fast and sensitive gapped read aligner
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Aug 8, 2021 - C++
Ultra-fast and memory-efficient (meta-)genome assembler
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Dec 13, 2019 - C++
A comprehensive tutorial about GWAS and PRS
unix
bioinformatics
gwas
r
genomics
genetics
plink
prs
population-structure
qc
population-stratification
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Jan 3, 2020
A high-performance, Pythonic language for bioinformatics
python
programming-language
bioinformatics
compiler
genomics
computational-biology
domain-specific-language
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Aug 11, 2021 - C++
Java utilities for Bioinformatics
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Aug 12, 2021 - Java
A React web application to query and share any PostgreSQL database.
react
postgres
data
gui
admin
bioinformatics
typescript
database
dashboard
material-design
genomics
reactjs
material-ui
postgresql
database-as-a-service
query-builder
postgrest
database-gui
data-sharing
react-admin
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Jul 28, 2021 - JavaScript
Fast genome-wide functional annotation through orthology assignment
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Jul 7, 2021 - Python
cython + htslib == fast VCF and BCF processing
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Jul 28, 2021 - Python
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
bioinformatics
snps
medicine
genomics
genome
cancer
biology
vcf
ensembl
medical
cancer-genomics
genome-annotation
proteomics
gtf
bed
cancer-genomes
genome-sequencing
genome-browser
genomes
csv-parser
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Sep 21, 2020 - Python
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Is there a schedule to add the deprecation warning as per:
https://github.com/biopython/biopython/blob/870f623005ed1b95df877f618cbb12a815bd5696/Bio/SeqFeature.py#L158-L175