Convert references in nilearn/regions/region_extractor.py to use footcite / footbibliography.
See #2759

The date and time on the output of the running docker container isn't correct, adding a volume "-v /etc/localtime:/etc/localtime:ro" might fix this?

This would help me know how long a process

Some is already in .gitignore, but some is not. We should check all examples.

Summary

There are a few additional bits of information that would be useful to add to the reports. I'll list a few here.

Additional Detail

• Add elbow thresholds to the sorted kappa & rho plots so that people can see which components fell above & below the elbows. Also may how when the elbow calculations were a bit odd compared to other datasets in a study. I'm not sure the elbow

the CBU example scripts demonstrate some really cool AA functionality that isn't really covered anywhere else, since we don't have much documentation. It's a shame that only people at CBU can run them (and in fact not even that many people at CBU since many of them use the CamCAN dataset).

It would be useful if t

What am I supposed to do with this bunch of JSON files?

The obviously missing piece from this project is part that allows converting the ouput of the app into a human readable method section any researcher can copy into their article.

The goal of this sub-project is to create some prototype scripts to:

• extract the relevant content from the JSON files one can download from the web a

This line https://github.com/SIMEXP/niak/blob/master/bricks/fmri_preprocess/niak_brick_regress_confounds.m#L234

should say "Adding motion parameters..."

and not "Adding high frequency noise..."