OpenGene - Open Source Genomics Toolbox

gencore Public
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

C++ 82 MIT 28 28 0 Updated Oct 13, 2021
fastp Public
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

C++ 1,105 MIT 237 180 3 Updated Oct 13, 2021
defastq Public
Ultra-fast Multi-threaded FASTQ Demultiplexing

C++ 2 MIT 0 0 0 Updated Sep 28, 2021
fastv Public
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.

C++ 89 MIT 18 8 0 Updated Sep 29, 2020
GeneFuse Public
Gene fusion detection and visualization

C 80 MIT 51 26 0 Updated Sep 17, 2020
IRDProc Public
Process genomic data downloaded from influenza research database for unique k-mer generating

Python 1 MIT 0 0 0 Updated Jul 30, 2020
UniqueKMER Public
Generate unique KMERs for every contig in a FASTA file

C 24 MIT 5 1 0 Updated Jul 28, 2020
repaq Public
A fast lossless FASTQ compressor with ultra-high compression ratio

C 92 MIT 17 6 0 Updated Jun 14, 2020
AfterQC Public
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

Python 179 MIT 51 23 1 Updated May 14, 2020
MutScan Public
Detect and visualize target mutations by scanning FastQ files directly

C 123 MIT 36 3 0 Updated Jan 21, 2020

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