#
gene
Here are 160 public repositories matching this topic...
Genome annotation with AUGUSTUS
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Sep 13, 2021 - C++
A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
gene
compression
nanopore
sam
pacbio
compress
bam
fastq
genomic-data-compression
compression-rate
fastq-compression
gtx
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Sep 6, 2021
MyGene.info: A BioThings API for gene annotations
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Aug 19, 2021 - Python
Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files
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Aug 30, 2021 - Jupyter Notebook
A minimal desktop app for easy and convenient gene annotation.
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May 7, 2021 - JavaScript
API for linked biological knowledge
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Sep 17, 2021 - Python
R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
count
gene
r
human
rstats
bioconductor
rnaseq
deseq2
illumina
exon
junction
derfinder
annotation-agnostic
recount
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Aug 10, 2021 - R
A standalone interactive application for detecting biological significance on a set of genes
gene
shiny
data-visualization
gene-ontology
shiny-apps
kegg-pathway
enrichment-analysis
non-model-species
gene-list
sig-bio-shiny
annotationhub
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May 2, 2021 - R
Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
tfs
roadmap
gene
rna-seq
motif
gene-expression
regulation
epigenetics
encode
cell
chip-seq
hotspot
plasticity
transcription-factor-binding
motifs
epigenomics
fimo
haystack-bio
specific-regions
haystack-pipeline
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Apr 22, 2021 - HTML
Annotate DNA sequences for Gene Ontology terms
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Jan 31, 2021 - Perl
Grace, fastest, flexibility, simple PHP extension framework！优雅、极速、灵活、简单的PHP扩展框架！
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Sep 13, 2021 - C
Generic germline variant annotation pipeline
docker
workflow
gene
database
singularity
vcf
variants
snv
vep
disease-gene-association
indels
annotation-tool
vcfanno
germline
variant-annotations
annotation-framework
snvs
germline-variants
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Aug 25, 2021 - Python
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Dec 18, 2019 - C++
(No maintenance) Detect gene fusion directly from raw fastq files
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Aug 13, 2017 - Julia
The knowledge of cloned rice genes lost in the information of rice functional genomics studies
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Sep 14, 2021 - HTML
Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:
visualization
python
quality-control
gene
clustering
identification
transcriptomics
anomaly-detection
batch-correction
single-cell-sequencing-analysis
automatic-cell-identification
cancer-heterogeneity
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Jun 8, 2021 - Python
Annotate genomics variations of hg19 by using a BED format database, which construct from NCBI annotation release 104
gene
database
perl
cds
construct
transcript
sequence-ontology
variant-annotations
chromosome
variant-annotation
acc
hgvs
human-variation
strand
bed-format
annotate-genomics-variations
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Jul 8, 2021 - Perl
Package to calculate functional similarity between genes https://biocor.llrs.dev
bioinformatics
gene
gene-sets
similarity
similarity-measurement
pathways
bioconductor-packages
pathway-analysis
functional-similarity
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Apr 26, 2021 - R
This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).
bioinformatics
gene
database
genomics
genetics
metagenomics
protein
fasta
proteomics
sequence
fastq
ncbi
nucleotide
curator
redundancy
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May 9, 2019 - Python
Feature extraction algorithm for genomic data
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Sep 2, 2021 - Python
Scalable inference of gene regulatory networks using Apache Spark and XGBoost
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Feb 8, 2018 - Scala
Inferring gene co-expression networks from single cell gene expression data
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Aug 4, 2021 - R
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