Here are
386 public repositories
matching this topic...
The codebase of the OpenMS project
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Updated
Sep 16, 2021
Python
A collection of Galaxy-related training material
Updated
Oct 17, 2021
HTML
A Python API for the RCSB Protein Data Bank (PDB)
Updated
Sep 5, 2021
Python
Various teaching material
Updated
Jan 12, 2021
HTML
Base Classes and Functions for Mass Spectrometry and Proteomics
Protein-Level ASSembler (PLASS): sensitive and precise protein assembler
A modular, python-based framework for mass spectrometry. Powered by nbdev.
Updated
Oct 11, 2021
Python
A complete toolkit for shotgun proteomics data analysis
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences
Updated
Sep 14, 2020
Python
A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data
Updated
Oct 17, 2021
HTML
Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
Updated
Jul 21, 2021
HTML
Prize-Collecting Steiner Forests for Interactomes
Updated
Mar 25, 2021
Jupyter Notebook
Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
Updated
Oct 17, 2021
Python
🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
Updated
Aug 5, 2021
Python
A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
Updated
Apr 19, 2021
Python
Deep (Transfer) Learning for Peptide Retention Time Prediction
Updated
Sep 17, 2021
Python
Compare different differential abundance and expression methods
Feature Annotation Location Description Ontology
Updated
Jan 21, 2020
XSLT
Toolbox for including enzyme constraints on a genome-scale model.
Updated
Aug 31, 2021
MATLAB
A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
Interpretation of proteomics identification results
Updated
Oct 14, 2021
Java
PDV: an integrative proteomics data viewer
Updated
Jun 14, 2021
Java
Highly adaptable common interface for proteomics search and de novo engines
Updated
Oct 12, 2021
Java
Open source Java library for computational proteomics
Updated
Sep 27, 2021
Java
pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning
Updated
Aug 22, 2019
Python
Improve this page
Add a description, image, and links to the
proteomics
topic page so that developers can more easily learn about it.
Curate this topic
Add this topic to your repo
To associate your repository with the
proteomics
topic, visit your repo's landing page and select "manage topics."
Learn more
You can’t perform that action at this time.
You signed in with another tab or window. Reload to refresh your session.
You signed out in another tab or window. Reload to refresh your session.
The following project @qinchunyuan needs to be fixed:
https://github.com/bigbio/proteomics-metadata-standard/tree/fb26f36359d8118534cf5e9025d15dcc021bb62c/annotated-projects/PXD008222
The project is a cell line project but the information about the cell-line are not included.