biomedical

A full spaCy pipeline and models for scientific/biomedical documents.

Chinese Biomedical Language Understanding Evaluation benchmark (ChineseBLUE)

🧫 A curated list of resources relevant to doing Biomedical Information Extraction (including BioNLP)

BioGrakn Knowledge Graph

SleepEEGNet: Automated Sleep Stage Scoring with Sequence to Sequence Deep Learning Approach

Full abstract relation extraction from biological texts with bi-affine relation attention networks

Workshop (6 hours): Deep learning in R using Keras. Building & training deep nets, image classification, transfer learning, text analysis, visualization

MedType: Improving Medical Entity Linking with Semantic Type Prediction

SCIRun is a Problem Solving Environment, for modeling, simulation and visualization of scientific problems. This is version 5, the upgraded version of SCIRun v4.

Named Entity Recognition with Small Strongly Labeled and Large Weakly Labeled Data

A software package for statistically significant shapelet mining

🤖 PyTorch toolkit for biomedical imaging ❤️

Weakly supervised medical named entity classification

Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing

Code for the paper Biomedical Event Extraction with Hierarchical Knowledge Graphs

Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]

Flexible and powerful platform for biomedical information extraction from text

Small Animal Magnetic Resonance Imaging via Python.

PDD Graph : Bridging MIMIC-III and Linked Data Cloud

Biomedical Visualization and Analysis Framework

Medical Relations and Entities Extraction

Repository used to collect biomedical corpus on the Internet!

Research data management in biomedical and machine learning applications

Collection of various biomedical data models in parseable formats.

Behavioral data analysis and plotting in Python.

Atrial Fibrillation Detection Blood Pressure Monitor (Oscillometric Method)

Multi-modal Image Registration And Connectivity anaLysis

A collection of tools for manipulation of morphological features in patient-specific geometries

Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association detection). First version has was published as part of the paper: Dieter Galea, Ivan Laponogov, Kirill Veselkov; Exploiting and assessing multi-source data for supervised biomedical named entity recognition, Bioinformatics, bty152, https://doi.org/10.1093/bioinformatics/bty152 . If you would like to add other (or your) corpora, please submit a pull request and I'll happily approve it.

This project is for Electrocardiogram(ECG) signal algorithms design and validation, include preprocessing, QRS-Complex detection, embedded system validation, ECG segmentation, label your machine learning dataset, and clinical trial...etc.