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  • University of Utrecht
  • Utrecht, Netherlands
  • Twitter @brent_p

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@kortschak

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@quinlan-lab
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Pinned

  1. slivar Public

    variant expressions, annotation, and filtering for great good.

    Nim 158 12

  2. mosdepth Public

    fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

    Nim 458 79

  3. goleft Public

    goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary

    Go 188 24

  4. hts-nim Public

    nim wrapper for htslib for parsing genomics data files

    Nim 141 22

  5. vcfanno Public

    annotate a VCF with other VCFs/BEDs/tabixed files

    Go 285 52

  6. somalier Public

    fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

    Nim 162 22

Contribution activity

February 2022

Opened 1 pull request in 1 repository
GooglingTheCancerGenome/sv-channels 1 open

Created an issue in PapenfussLab/gridss that received 1 comment

CollectMultipleSequenceMetrics

Hi Daniel, I arrived here from broadinstitute/picard#1277 I'd like to get the speedup on CollectMultipleSequenceMetrics. Is there anything I should…

1 comment
Opened 1 other issue in 1 repository
38/d4-format 1 open

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