2-6300, bldg10, NIH
frashidi AT iu DOT edu

I am a predoctoral visiting fellow at the National Cancer Institute (NCI) working in Cancer Data Science Laboratory (CDSL) under supervision of Dr. Cenk Sahinalp. I am also a Ph.D. candidate studying Computer Science at the Indiana University Bloomington (IUB) since 2017. My main research focus is on Tumor Heterogeneity and Cancer Evolution modeling using Single-cell sequencing data. I completed my Master’s thesis at the Sharif University of Technology where I worked on learning of Alternative Splicing problem, jointly supervised by Dr. Abolfazl Motahari and Dr. Hamid Rabiee. I received my Bachelor’s degree from Amirkabir University of Technology (Tehran Polytechnic) in Iran.

Publications:

Below is my first/co-first author publications. The full list is available on Google Scholar and on ORCID.

	P5 Profiles of expressed mutations in single cells reveal subclonal expansion patterns and therapeutic impact of intratumor heterogeneity bioRxiv Full text Poster Webpage Code Presentation
	P4 Epigenomic tumor evolution modeling with single-cell methylation data profiling bioRxiv Full text
	P3 Review on Studying the History of Tumor Evolution from Single-Cell Sequencing Data by Exploring the Space of Binary Matrices Journal of Computational Biology Full text
	P2 PhISCS-BnB: a fast branch and bound algorithm for the perfect tumor phylogeny reconstruction problem Bioinformatics ISMB 2020 Proceedings Full text Supplementary Code Presentation
	P1 PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing data Genome Research Full text Supplementary Code Presentation

Software:

	S2 Trisicell: a scalable tumor phylogeny reconstruction and validation tool using single-cell data Webpage Code Publication Star Fork
	S1 Kaggle Solutions: a searchable list of almost all available solutions and ideas shared by top performers in the past Kaggle competitions Webpage Code Star Fork