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@dib-lab @BrendelGroup @bioconda @bioforensics
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Pinned

  1. Portable database of microhaplotype marker and allele frequency data

    Python 3 1

  2. Reference-free variant discovery in large eukaryotic genomes

    Python 40 9

  3. In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

    Python 675 306

  4. Integrated toolkit for analysis and evaluation of annotated genomes

    C 20 8

  5. tag Public

    Genome annotation data analysis and management implemented in pure Python

    Python 6

  6. Polistes dominula genome project, a collaboration between the Insect Sociogenomics Lab at Iowa State University and the Computational Genome Science Lab at Indiana University

    Makefile 6 1

195 contributions in the last year

May Jun Jul Aug Sep Oct Nov Dec Jan Feb Mar Apr Mon Wed Fri

Contribution activity

April 2022

Created a pull request in bioforensics/MicroHapulator that received 38 comments

End-to-end microhap analysis pipeline

This PR adds a new subcommand, mhpl8r pipe, that implements an end-to-end microhap sequence analysis pipeline. It integrates elements of several pr…

+1,163 −17 38 comments
Reviewed 6 pull requests in 3 repositories
bioforensics/MicroHapulator 4 pull requests
bioforensics/yeat 1 pull request
bioconda/bioconda-recipes 1 pull request

Created an issue in bioforensics/MicroHapulator that received 1 comment

New API function / class method to compute aggregate and per-marker typing rate

with open(input.json, "r") as fh: result = json.load(fh) data = { "Marker": list(), "TypedReads": list(), "TotalReads": list(), "TypingRate": list(…

1 comment
Opened 3 other issues in 2 repositories

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