- Frederick, MD
- http://standage.github.io
Block or Report
Block or report standage
Contact GitHub support about this user’s behavior. Learn more about reporting abuse.
Report abusePinned
-
bioforensics/MicroHapDB Public
Portable database of microhaplotype marker and allele frequency data
-
-
dib-lab/khmer Public
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
-
BrendelGroup/AEGeAn Public
Integrated toolkit for analysis and evaluation of annotated genomes
-
Polistes dominula genome project, a collaboration between the Insect Sociogenomics Lab at Iowa State University and the Computational Genome Science Lab at Indiana University
195 contributions in the last year
Activity overview
Contribution activity
April 2022
Created 16 commits in 3 repositories
Created a pull request in bioforensics/MicroHapulator that received 38 comments
End-to-end microhap analysis pipeline
This PR adds a new subcommand, mhpl8r pipe, that implements an end-to-end microhap sequence analysis pipeline. It integrates elements of several pr…
Opened 8 other pull requests in 3 repositories
bioforensics/MicroHapulator
5
merged
bioforensics/pytaxonkit
2
merged
bioforensics/rsidx
1
merged
Reviewed 6 pull requests in 3 repositories
bioforensics/MicroHapulator
4 pull requests
bioforensics/yeat
1 pull request
bioconda/bioconda-recipes
1 pull request
Created an issue in bioforensics/MicroHapulator that received 1 comment
New API function / class method to compute aggregate and per-marker typing rate
with open(input.json, "r") as fh: result = json.load(fh) data = { "Marker": list(), "TypedReads": list(), "TotalReads": list(), "TypingRate": list(…