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@nf-core

nf-core

A community effort to collect a curated set of analysis pipelines built using Nextflow.
README.md

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Welcome to @nf-core!

@nf-core is a community effort to collect a curated set of analysis pipelines built using Nextflow (@nextflow-io).

Here's how to get started:

Pinned

  1. tools Public

    Python package with helper tools for the nf-core community.

    Python 131 91

  2. modules Public

    Repository to host tool-specific module files for the Nextflow DSL2 community!

    Nextflow 91 166

  3. rnaseq Public

    RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

    Nextflow 408 391

  4. chipseq Public

    ChIP-seq peak-calling, QC and differential analysis pipeline.

    Nextflow 94 87

  5. sarek Public

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

    Nextflow 137 207

  6. eager Public

    A fully reproducible and state-of-the-art ancient DNA analysis pipeline

    Nextflow 61 57

Repositories

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