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nipype

Here are 24 public repositories matching this topic...

ReproNim / neurodocker

Generate custom Docker and Singularity images, and minimize existing containers

linux docker science dockerfile reproducible-research containers neuroscience singularity-container nipype

Updated Apr 14, 2022
Python

dPys / PyNets

A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

workflow metrics optimization data-frame networkx ensemble-learning networks dmn fmri decision-trees nilearn fuzzy-logic covariance multiverse brain-connectivity tractography nipype dipy gridsearch graph-neural-networks dmri ensemble-sampling

Updated Apr 5, 2022
Python

miykael / nipype-beginner-s-guide

Beginner's guide for Nipype

python tutorial neuroimaging nipype

Updated Jun 10, 2021
Python

neuropycon / ephypype

Neuropycon package of functions for electrophysiology analysis, can be used from graphpype and nipype

connectivity electrophysiology mne-python nipype

Updated Mar 12, 2022
Python

Neurita / pypes

Reusable neuroimaging pipelines using nipype

pet neuroimaging plotting fmri preprocessing dti nipype ica

Updated May 28, 2019
Python

mialsuperresolutiontoolkit

Medical-Image-Analysis-Laboratory / mialsuperresolutiontoolkit

The Medical Image Analysis Laboratory Super-Resolution ToolKit (MIALSRTK) consists of a set of C++ and Python processing and workflow tools necessary to perform motion-robust super-resolution fetal MRI reconstruction in the BIDS Apps framework.

workflow mri bids itk super-resolution nipype fetal bids-apps

Updated Mar 24, 2022
C++

nmningmei / preprocessing_pipelines

Preprocessing Pipelines for EEG (MNE-python), fMRI (nipype), MEG (MNE-python/autoreject) data

pipelines python3 meg eeg preprocessing fsl mne-python nipype fmri-preprocessing

Updated Dec 13, 2021
Jupyter Notebook

Neurita / neuro_docker

A Dockerfile to create a Ubuntu docker for neuroimaging

python dockerfile ubuntu matlab docker-image nipype pypes

Updated Nov 11, 2018
Shell

Macatools / macapype

PNH segmentation pipelines based on nipype

python mri mesh fsl nipype brain-extraction ants afni brain-segmentation spm12 mri-segmentation primate mri-analysis

Updated Apr 22, 2022
Python

populse_mia

populse / populse_mia

Multiparametric Image Analysis

python processing image pipeline mri nipype capsul

Updated Apr 26, 2022
Python

brainhack-ch / superres-mri

Portable, modular, reusable, and reproducible processing pipeline software for fetal brain MRI super-resolution

mri neuroimaging super-resolution nipype brainhack fetal bids-format bidsapp slice-to-volume opengeneva2019 brainhack-global

Updated Nov 15, 2019
Jupyter Notebook

axiezai / pipetography

Open

Complete input features for certain commands

5

axiezai commented Feb 24, 2020

All commands should have adequate inputs now, but some are missing full functionality

Read more

bug enhancement good first issue

spisakt / PUMI

Pypelines Utilizing a Modular Inventory

neuroimaging nipype neuroimaging-analysis porcupine

Updated Dec 18, 2019
Python

nipreps / eddymotion

Open

Reportlet - Head-Motion+Eddy correction

oesteban commented Apr 22, 2021

Place under the viz module a reportlet generation tool, based on the comments here nipreps/dmriprep#144 (comment)

Read more

good first issue effort: medium impact: high visualization

Open

Integration and validation tests with b=0 only

4

tsalo / complex-flow

Initial work on a complex-valued fMRI preprocessing workflow.

Updated Aug 7, 2020
Python

p3proc / p3

An extensible fMRI Preprocessing Pipeline in nipype based on a 2015 Jonathan Power Pipeline

python neuroscience neuroimaging fmri preprocessing fsl nipype ants afni

Updated Aug 20, 2018
Python

andrewrosss / nipype-generate-fieldmaps

Sponsor

Nipype workflow to generate fieldmaps from EPI acquisitions with differing phase-encoding directions

neuroscience neuroimaging fsl nipype epi topup phase-encoding fieldmap

Updated Feb 3, 2022
Python

p3proc / p3-compose

A graphical pipeline builder for p3 in electron

electron nodejs gui neuroimaging nipype

Updated Mar 15, 2020
JavaScript

jscanass / dwi_processing

python jupyter beta neuroimaging pre-alpha nipype dipy

Updated May 11, 2019
Jupyter Notebook

schluppeck / dockerize-analysis

build a container from which EH's analysis code (and others) can be run, without relying on windows/mac compatibility

docker fsl nipype

Updated Jan 4, 2022
Dockerfile

andrewrosss / nipype-fsl-anat

Sponsor

Nipype interface(s) wrapping the fsl_anat command line tool

neuroscience neuroimaging fsl nipype anatomical-mri fsl-anat

Updated Jan 21, 2022
Python

labhstats / mri-prepro-nipype

mri preprocessing nifti nipype

Updated Sep 13, 2017
Python

jrasero / my-nipype-pipelines

Some pipelines implemented with nipype.

python nipype fmri-analysis

Updated Sep 28, 2021
Jupyter Notebook

mobatusi / BrainHack2017

A summary of topics covered by the Nipype workshop and hackweek

Updated Dec 10, 2017

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