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docker-jupyter-notebook Public
🐳 🔬 📚 Jupyter running in a docker container. This image can be used to integrate Jupyter into Galaxy
4,475 contributions in the last year
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Activity overview
Contributed to
galaxyproject/tools-iuc,
usegalaxy-eu/website,
bioconda/bioconda-recipes
and 5 other
repositories
Contribution activity
January 2022
Created 94 commits in 16 repositories
Created a pull request in bioconda/bioconda-recipes that received 3 comments
rebuild smudgeplot
Describe your pull request here Please read the guidelines for Bioconda recipes before opening a pull request (PR). If this PR adds or updates a …
+4
−3
•
3
comments
Opened 5 other pull requests in 4 repositories
bioconda/bioconda-recipes
2
merged
conda-forge/staged-recipes
1
open
galaxyproject/training-material
1
merged
galaxyproject/galaxy
1
open
Reviewed 80 pull requests in 16 repositories
bioconda/bioconda-recipes
26 pull requests
- Update coprarna with less constraint dependencies
- Update interproscan
- Update intarna to trigger rebuild with recent BOOST
- Update r-acidgenomes to 0.2.20
- Update primer3 to 2.6.0
- Bumped old version of MaSuRCA from 3.4.2 to 4.0.6
- Update masurca to 4.0.6
- Update submission-tool-validator to 1.0.6
- Update semibin to 0.5.0
- Update pango-designation to 1.2.122
- Update elastic-blast to 0.2.0
- Update dxpy to 0.318.1
- Update jbrowse2 to 1.5.5
- Update msgf_plus to 2022.01.07
- Update: Pre-test for OpenMS 2.7
- Update unitem to 1.0.4
- Update PhyloCSFpp to 1.2.0
- Update pango-designation to 1.2.121
- Update rustybam to 0.1.25
- Update smallgenomeutilies to version 0.3.5
- Update GraphAligner to version 1.0.14
- Update toulligqc to 2.2.1
- Update super-focus to 1.5
- Update build for rustybam
- Add r-lymphclon
- Some pull request reviews not shown.
galaxyproject/tools-iuc
20 pull requests
- Updating tools/crossmap from version 0.5.2 to 0.6.1
- Updating tools/interproscan from version 5.52-86.0 to 5.54_87.0
- add new tool rpfba v5.11.1
- Updating tools/nextclade from version 1.7.0 to 1.9.0
- Updating tools/seurat from version 4.0.6 to 4.1.0
- Tagging policy
-
Increase
MAX_FILE_SIZEto 1Mb - update download_idr
- bbtools, ensure read pair identifiers differ
- rnaQUAST: fix --busco option
- Add new tool NGS-QC v1.7.6
- bedtools GetFastaBed: add -nameOnly flag
- Genomic super signature
- Update Megahit from 1.1.3 to 1.2.9 version
- add new tool rpextractsink v5.11.1
- Add new genome annotation data manager and first tool using its data
- Updating tools/minimap2 from version 2.23 to 2.24
- Updating tools/bwameth from version 0.2.2 to 0.2.3
- Updating tools/proteinortho from version 6.0.31 to 6.0.32
- new tool icescreen
galaxyproject/training-material
9 pull requests
- Update VGP training 18.02
- Auto Compress Images
- Updating MaxQuant & MSstats tutorials
- Update slides.html
- VGP training: Giulio Formenti suggestions part. 2
- Change PRIDE FTP base path
- Update links to new ftp location in PRIDE
- VGP training: Fix labels
- Update tutorial: include import workflow section and hidden unfinished parts
galaxyproject/galaxy
9 pull requests
- [21.09] Show yaml files in preview
- Add new datatype GRIB
- Add tool to gzip any file or collection
- [21.09] Fix re-run with rerun_remap_job_id hiding collection
- Update Python dependencies
- Fix logo link when using prefix
- [PROCEDURES] Remove Oleg from committers list
- [PROCEDURES] Remove Dave C. from committers list
- Fix selenium test via dropping redundant test case
usegalaxy-eu/ena-upload-cli
2 pull requests
BioContainers/multi-package-containers
2 pull requests
BMCV/galaxy-image-analysis
2 pull requests
galaxyecology/tools-ecology
2 pull requests
galaxyproject/galaxy-hub
1 pull request
conda-forge/staged-recipes
1 pull request
bgruening/galaxytools
1 pull request
NordicESMhub/galaxy-tools
1 pull request
conda-forge/r-seurat-feedstock
1 pull request
galaxycomputationalchemistry/galaxy-tools-compchem
1 pull request
galaxyproteomics/tools-galaxyp
1 pull request
usegalaxy-eu/website
1 pull request
Created an issue in galaxyproject/galaxy that received 1 comment
Connection issue in the workflow editor (Bowtie)
Describe the bug I think both tools should be able to be connected. Related: https://help.galaxyproject.org/t/bowtie2-output-data-type-not-recogni…
1
comment