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epidemics

Here are 100 public repositories matching this topic...

seirsplus

ryansmcgee / seirsplus

Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

epidemiology epidemics epidemiology-analysis epidemic-model epidemic-simulations coronavirus covid-19 covid sars-cov-2

Updated Jan 15, 2022
Python

SORMAS-Project

hzi-braunschweig / SORMAS-Project

SORMAS (Surveillance, Outbreak Response Management and Analysis System) is an early warning and management system to fight the spread of infectious diseases.

android web offline-first surveillance epidemics diseases infectious-diseases outbreak low-bandwidth covid-19 contact-tracing

Updated Apr 16, 2022
Java

CodeForPhilly / chime

COVID-19 Hospital Impact Model for Epidemics

epidemiology epidemics code-for-america penn covid-19 code-for-philly

Updated Mar 12, 2022
Python

GiulioRossetti / ndlib

Network Diffusion Library - (for NetworkX and iGraph)

simulation complex-networks epidemics opinion-dynamics

Updated Apr 11, 2022
Python

EpiModel

EpiModel / EpiModel

Mathematical Modeling of Infectious Disease Dynamics

network-graph agent-based-modeling epidemiology epidemics infectious-diseases

Updated Apr 15, 2022
R

safreita1 / TIGER

Python toolbox to evaluate graph vulnerability and robustness (CIKM 2021)

data-science machine-learning data-mining attack graph simulation vulnerability networks epidemics defense graph-mining diffusion robustness graph-attack adversarial-attacks network-attack cascading-failures netshield

Updated Aug 25, 2021
Python

benmaier / tacoma

Temporal networks in Python. Provides fast tools to analyze temporal contact networks and simulate dynamic processes on them using Gillespie's SSA.

networks temporal-networks network-visualization epidemics face2face face-to-face contact-networks

Updated May 22, 2020
C++

imdevskp / covid_19_jhu_data_web_scrap_and_cleaning

This repository contains data and code used to get and clean data from https://github.com/CSSEGISandData/COVID-19 and https://www.worldometers.info/coronavirus/

python pandas epidemics webscraping pandemic beatifulsoup datacleaning outbreak covid-19

Updated Nov 1, 2020
Jupyter Notebook

covid19-model / simulator

Code base for the epidemiological model introduced in the context of COVID-19

epidemiology epidemics points-of-interest point-process hotspots coronavirus coronavirus-analysis covid-19 infection-hotspots superspreaders superspreading-events

Updated Feb 22, 2022
HTML

jangevaare / Pathogen.jl

Simulation, visualization, and inference tools for modelling the spread of infectious diseases with Julia

julia evolution epidemics mcmc infectious-diseases

Updated Apr 2, 2022
Julia

seandavi / sars2pack

Open

Interesting package for looking at phylogenetics

seandavi commented Sep 8, 2020

Inference of transmission tree from a dated phylogeny

https://cran.r-project.org/web/packages/TransPhylo/vignettes/infer.html

Read more

documentation enhancement good first issue

Open

[New Data Resource] Florida DOH line list

Open

[New Data Resource] CDC Hospitalization daily estimates

Find more good first issues

cognizant-ai-labs / covid-xprize

Open-source repository containing examples and documentation for the Cognizant XPRIZE Pandemic Response Challenge

challenge machine-learning reinforcement-learning ai optimization artificial-intelligence response epidemics pandemic xprize covid-19 covid covid19 x-prize competition-guidelines

Updated Apr 6, 2022
Python

metalcorebear / COVID-Agent-Based-Model

Disease propagation ABM generating SIR, severe cases, and R0 over quasi-time.

agent-based-modeling epidemiology epidemics mesa agent-based-simulation project-mesa covid-19 covid

Updated Apr 18, 2020
Python

jstockwin / EpiEstimApp

Source code for the EpiEstim app.

r transmission disease epidemiology modelling epidemics disease-spread

Updated Jun 4, 2020
R

pennsignals / chime_sims

Bayesian fit to SEIR model. An extension to Penn Medicine's CHIME tool.

epidemiology epidemics penn covid-19 covid covid19

Updated Nov 10, 2020
Jupyter Notebook

cherrysrc / SpreadSimulator

Epidemics simulation

go golang simulation epidemics hacktoberfest

Updated Oct 11, 2021
Go

PetoLau / CoronaDash

COVID-19 spread shiny dashboard with a forecasting model, countries' trajectories graphs, and cluster analysis tools

time-series shiny clustering forecasting rstats epidemics cluster-analysis shinydashboard time-series-analysis time-series-clustering time-series-forecasting forecasting-model coronavirus coronavirus-tracking epidemic-data covid-19 covid-virus forecasting-covid-19

Updated Oct 1, 2020
R

MohamedHmini / D-PandiSIM

distributed pandemics simulator, uses the power of spark to generate huge bulks of contact-tracing data.

big-data spark graph-algorithms markov-chain pyspark epidemics distributed-programming epidemic-simulations pandemic-simulator

Updated Feb 2, 2021
Jupyter Notebook

jtmatamalas / MMCAcovid19.jl

Microscopic Markov Chain Approach to model the spreading of COVID-19

markov-chain disease epidemics probabilistic-models covid-19

Updated Apr 26, 2021
Julia

wangxianghust / SIS-SIR-Simulation

Epidemic simulation models of complex network.

simulation sis epidemics sir

Updated Apr 8, 2017
C++

lo-hfk / epyestim

Python package to estimate the time-varying effective reproduction number of an epidemic from reported case numbers

epidemics reproduction-number epiestim

Updated Dec 12, 2020
Jupyter Notebook

wcota / dynSIS-networkx

Networkx implementation of the SIS epidemic model for large and heterogeneous networks

networkx computational-physics complex-networks epidemics stochastic-processes stochastic-simulation-algorithm markovian-epidemic-processes gillespie-algorithm markovian-processes

Updated Mar 4, 2022
Python

junhua / EPIC

EPIC: a large collection of over 30 million epidemic-related tweets

dataset epidemics

Updated Jul 28, 2020

ContentMine / FutureTDM

Materials of FutureTDM project

text-mining data-mining tutorial workshop jupyter-notebook oer open-data open-access epidemics tdm network-analysis aedes pandemic contentmine eupmc zika usutu-virus futuretdm

Updated Aug 22, 2017
Jupyter Notebook

MetaWards

metawards / MetaWards

MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture to support complex scenario modelling

epidemiology epidemics sir-model epidemiology-analysis epidemic-model epidemic-simulations coronavirus covid-19 covid

Updated Mar 29, 2022
Python

temp3rr0r / CellularAutomataEpidemicModels

Stochastic Cellular Automata epidemic models in Python with 2D simulations

python simulation animation numpy cellular-automata pygame ode stochastic sis modelling epidemics sir seis moore-neighborhoods sirs forrest-fire

Updated Feb 24, 2020
Python

edoardottt / COVID-19

Info/Data (global/italy)about COVID-19. PR welcome for other countries.

data-science data virus data-visualization disease epidemiology epidemics symptoms spread pandemic droplets epidemiology-analysis coronavirus coronavirus-tracking coronavirus-real-time coronavirus-info covid-19 sars-cov-2 covid-data coronavirus-disease

Updated Mar 9, 2021
Python

GiulioRossetti / ndlib-rest

Network Diffusion Library REST Service

simulator rest-api complex-networks epidemics opinion-dynamics

Updated Jul 2, 2019
Python

COVID19RJ

americocunhajr / COVID19RJ

Repositório da iniciativa COVID19: Observatório Fluminense, com dados, gráficos e relatórios sobre a evolução pandemia de COVID-19, com especial interesse no Estado do RJ.

statistical-analysis epidemiology epidemics mathematical-biology covid-19 covid sars-cov-2 covid19-data covid19-graph covid19-tracker covid19-brazil covid-brazil covid-reports

Updated Jan 12, 2022
Jupyter Notebook

Simulaciones-de-epidemias

programandoconro / Simulaciones-de-epidemias

Simulaciones de epidemias 👾 en poblaciones con mezclas homogéneas 👪 utilizando modelos basados en agentes autónomos 🤖

app machine-learning r biological-simulations population randomness simulations epidemics pandemic population-dynamics population-model agent-based-simulation agentes shiny-r biological-simulation epidemia covid population-epidemics simulaciones-de-epidemias homogenous-mix

Updated Mar 21, 2020
R

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