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  • Altius Institute for Biomedical Sciences
  • Seattle, WA USA

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Arctic Code Vault Contributor

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alexpreynolds/README.md

Hello!

I work in the Meuleman lab at the Altius Institute to help simplify and enhance analysis of, presentation of, and interaction with complex and large-scale datasets. The following repositories are tools and code snippets I've made or contributed to, along the way. Share and enjoy!

Pinned

  1. bedops/bedops Public

    🔬 BEDOPS: high-performance genomic feature operations

    C 233 55

  2. sample Public

    Performs memory-efficient reservoir sampling on very large input files delimited by newlines

    C 52 8

  3. byte-store Public

    Generate and explore upper triangular and square matrices of 1-byte values

    C 2 1

  4. soda Public

    Python-based UCSC genome browser snapshot-taker and gallery-maker

    JavaScript 11 2

  5. kmer-collapse Public

    Collapse a set of redundant kmers to use IUPAC degenerate bases

    Python 3

  6. disjoint-windows Public

    Build a list of high-scoring, non-overlapping intervals using sampling or scheduling methods

    Python 1

151 contributions in the last year

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March 2022

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