snp

web-based protein structure viewer and analysis tool interactively or in batch mode

R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development Version)

gwasrapidd: an R package to query, download and wrangle GWAS Catalog data

Data management of large-scale whole-genome sequence variant calls (Development Version)

A set of scripts for calculating pairwise SNP distance

SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.

Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature

R package – HLA Genotype Imputation with Attribute Bagging (development, unstable version)

An interactive graphical illustration of genetic associations and their biological context

vSNP -- validate SNPs

A comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines

R package for RIVER (RNA-Informed Variant Effect on Regulation)

Compute a pairwise SNP distance matrix from one or two alignment(s)

R package for pedigree inference based on SNP data

Multi-bAse Codon-Associated variant Re-annotatiON (MACARON)

SNP abundance correlates with network degree

Collecting Genotypes from ENA and make their SNPs

Tools for analyzing raw DNA test data files. Shows Y chromosome and mitochondrial mtDNA haplogroups. LGPLv3 - use freely but share improvements.

Your genome report

The DKFZ-ODCF, formerly DKFZ/eilslabs SNV-Calling Workflow

Predictive marker discovery for groups; binary data, genomic data (single nucleotide variants), arbitrary character data.

Warehousing DbSNP's JSON Data into PostgreSQL

A QC pipeline for SVs calls based on coverage and SNP calls

Count common and unique SNPs among several populations from a VCF format file.

Tool for genome wide association studies with Bayesian inference and statistical learning

nf-core/mycosnp

Polymorphic Edge Detection - An efficient polymorphism detector for NGS data

Calculates Additive and Dominance Relationship Matrices

Galaxy For Life Science - SNiPlay