Here are
56 public repositories
matching this topic...
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Updated
Apr 14, 2022
Scala
Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
Updated
Mar 19, 2021
HTML
Funnel is a toolkit for distributed task execution via a simple, standard API.
Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
Updated
Jan 24, 2018
Python
The WES API is a standard way to run and manage portable workflows.
Updated
Mar 22, 2022
Python
Repository for the GA4GH phenopacket schema
Updated
Feb 22, 2022
Java
GA4GH Task Execution Service Root Project + Deployment scripts on Kubernetes
Updated
Dec 7, 2021
Jinja
GA4GH Variation Representation Python Implementation
Updated
Apr 14, 2022
Jupyter Notebook
GA4GH Beacon specification.
APIs for discovering genomics tools, their metadata and their containers
Updated
Mar 27, 2022
Shell
A GA4GH Task Execution Service (TES) compatible implementation for Azure Compute
Updated
Feb 11, 2022
Python
ELIXIR GA4GH Workflow Execution Service
Updated
Apr 5, 2022
Python
Interoperable execution of workflows using GA4GH APIs
Updated
May 19, 2021
Python
Code examples for working with web based bioinformatics APIs
Updated
Feb 17, 2017
Jupyter Notebook
Repository for the Google Summer of Code for the Reference Retrieval API
Updated
Apr 8, 2022
Python
GA4GH TES API Service that translates tasks into Kubernetes Batch API calls
Updated
Feb 23, 2022
Java
GA4GH cryptographic tools
Updated
Mar 8, 2021
Python
Website of ELIXIR Beacon - A GA4GH Driver Project
GA4GH Web components are the reusable custom elements that can be utilized in your web apps & web pages independently irrespective of what framework/library you are using to build the frontend.
Updated
Apr 2, 2022
TypeScript
Workflow for GA4GH/DREAM challenge (phase 2)
Updated
Jun 2, 2020
Common Workflow Language
Updated
Sep 21, 2020
Python
GA4GH Beacon v2 specification.
Repository for the family history/pedigree project
Python backend for Biocontainers (Flask + MongoDB)
Updated
Apr 20, 2021
Python
Rust implementation for the Crypt4GH encryption format
Updated
Mar 14, 2022
Rust
Matchmaker Exchange for Monarch
Updated
Nov 7, 2017
Scala
AWS serverless implementation of the refget service
Updated
Jun 2, 2021
Python
Java CLI and library for creating, converting and validating GA4GH Phenopackets
Updated
Apr 14, 2022
Java
Python code that is launched as images into the Kubernetes cluster by tesk-api.
Updated
Jan 24, 2022
Python
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Proposed solution
Have a
infoin the response that specifies if the data in the beacon is 0-based or 1-based.While the recommendation for the API is to be 0-based ga4gh-beacon/specification#251 , that might not always be the case. Hence we will add some information to the API that a beacon deployment can specify what kind of data it has.
This is GA4GH relate