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64 Open 743 Closed
64 Open 743 Closed
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enahncement of multibamsummary performance enhancement
#1138 opened May 6, 2022 by LeilyR
1
heatmap - name and position of gene of itnerest
#1133 opened Mar 29, 2022 by mvukk
1
AttributeError: 'module' object has no attribute 'to_hex'（deeptools v2.3.2）
#1131 opened Mar 24, 2022 by Golden-proteogenomics
1
bamCompare --skipZeroOverZero bugged
#1130 opened Mar 22, 2022 by joshscurll
computeGCBias - UnboundLocalError: local variable 'index' referenced before assignment
#1129 opened Mar 7, 2022 by Simso86
different sizes of .fasta files inputs changes output
#1126 opened Feb 28, 2022 by rotemavr
1
Possible to calculate AUC and/or statistics for computeMatrix/plotProfile results?
#1123 opened Feb 24, 2022 by bhanratt
2
keeping track of chr:start-end of bins when using multiBamSummary in bin mode
#1120 opened Feb 12, 2022 by castaway1990
1
Can I draw a whole-genome chromatin metaplot with Deeptools?
#1119 opened Feb 8, 2022 by TheAbsy
1
bamCoverage taking four nucleotides instead of three when --MNase is used
#1118 opened Jan 27, 2022 by feraltp
computeMatrix scale-regions. error("'i' format requires -2147483648 <= number <= 2147483647",)
#1114 opened Jan 3, 2022 by alfonsosaera
3
Skewed heatmap for the ChIP-seq peaks when plotting w.r.t the reference point "Center".
#1111 opened Dec 10, 2021 by Unlock-ViV
latin
#1110 opened Dec 5, 2021 by AkikoKumagai
4 tasks
1
bamCompare --skipZeroOverZero has incorrect coordinates
#1108 opened Dec 4, 2021 by therealgenna
Not able to change xRange and yRange from plotCorrelation
#1107 opened Nov 27, 2021 by iramai
1
BamCoverage: last bin
#1102 opened Oct 21, 2021 by sarah872
4
While using computeMatrix it is saying segmentation fault.
#1100 opened Oct 11, 2021 by azadeutsche114
1
How is fragment length calculated?
#1099 opened Sep 29, 2021 by gabedolpten
1
deepTools reports it cannot find an existing file, if it is truncated
#1098 opened Sep 29, 2021 by cviner
2
CountReadsPerBin using bedFile does not return counts in the expected order
#1097 opened Sep 22, 2021 by alexbarrera
2
NaN in computeMatrix
#1096 opened Sep 20, 2021 by markgene
1
Header in outFileNameMatrix TSV file has extra fields
#1094 opened Sep 12, 2021 by marcoct
AlignmentSieve returns empty bam file
#1093 opened Sep 12, 2021 by gabedolpten
1
ComputeMatrix --quiet does not seem to work
#1091 opened Sep 9, 2021 by joncahn
4 tasks done
Is TSS enrichment plot showing the correct output?
#1090 opened Sep 2, 2021 by kkupkova
4 tasks done
1
ProTip! Exclude everything labeled bug with -label:bug.