#
blast
Here are 160 public repositories matching this topic...
MMseqs2: ultra fast and sensitive search and clustering suite
bioinformatics
taxonomy
metagenomics
alignment
sequence-clustering
profile-search
sequence-search
linclust
mmseqs
blast
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Updated
Apr 7, 2022 - C
Python library to facilitate genome assembly, annotation, and comparative genomics
bioinformatics
genomics
assembly
blast
comparative-genomics
variant-calling
synteny
sequence-alignments
genome-sequencing
genetic-maps
allmaps
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Updated
Mar 30, 2022 - Python
SeqAn's official repository.
high-performance
cpp14
indexing
simd
alignment
bwt
fasta
blast
fastq-format
bioinfomatics
suffixarray
sequence-alignments
seqan
htslib
sam-bam
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Updated
Apr 5, 2022 - C++
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
bioinformatics
modern
cpp17
fasta
blast
seqan
fastq
samtools
sequence-alignment
fm-index
sequence-analysis
cpp20
cpp-concepts
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Updated
Apr 5, 2022 - C++
A Python API for the RCSB Protein Data Bank (PDB)
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Updated
Nov 1, 2021 - Python
LAMBDA – the Local Aligner for Massive Biological DatA
bioinformatics
high-performance
cpp14
metagenomics
alignment
protein-sequences
ncbi-taxonomy
blast
blast-searches
seqan
-
Updated
Nov 7, 2021 - C++
Genome wide orthology inference and dNdS estimation
r
genomics
species
blast
comparative-genomics
proteome
blast-searches
orthology-inference
comparative-genomics-studies
sequence-alignments
comparative
dnds-estimation
codon-alignment
sequence-alignment
biomartr
entire-genomes
orthologous-genes
comparing-genomes
genomics-studies
retrieve-genomes
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Updated
Nov 8, 2021 - R
Collection of scripts for bacterial genomics
science
unix
opensource
bioinformatics
annotation
genomics
perl
ngs
sequencing
computational-biology
microbial-genomics
blast
microbiology
mlst
bioperl
scripts-collection
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Updated
Dec 6, 2019 - Perl
PrimerServer2: a high-throughput primer design and specificity-checking platform
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Updated
Feb 8, 2022 - Python
MView extracts and reformats the results of a sequence database search or multiple alignment.
bioinformatics
perl
extract
fasta
blast
sourceforge
pir
blast-search
ebi
sanders
msf
bioinformatics-tool
leroy
clustal
sequence-alignment-visualization
mview
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Updated
Oct 20, 2020 - Perl
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
python
shell
bash
data-science
bioinformatics
genetics
biology
ftp
sge
phylogenetics
blast
orthologues
qsub
orthology-inference
ncbi
sequence-alignment
pbs
orthologs
orthology
biosql
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Updated
Feb 25, 2022 - Python
BLAST Sequence Searches with R
protein
species
blast
blast-searches
nucleotide
biological-sequences
blasting
blastn
blast-search
sequence-diversity
biomartr
blast-hits
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Updated
Dec 6, 2021 - R
BlasterJS - an open source JS library to display Blast results
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Updated
Oct 18, 2019 - JavaScript
ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective
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Updated
Mar 24, 2022 - Python
Repository-based plasmid design
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Updated
Jan 29, 2020 - Go
Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.
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Updated
Mar 12, 2018 - HTML
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Updated
Nov 12, 2019 - Python
Microsoft Azure HPC & Big Compute
bioinformatics
research
blast
azure-storage
blast-searches
lifescience
blastn
blast-search
azure-hpc
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Updated
Aug 18, 2019 - JavaScript
The BiomolecularStructures package provides several Bioinformatics-related modules for Julia.
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Updated
Jun 13, 2017 - Julia
Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools
hpc
cluster
perl
robust
blast
hpc-applications
ncbi-blast
grid-engine
sequence-analysis
grid-cloud
plast
hpc-blast
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Updated
Apr 26, 2020 - Perl
hsiaoyi0504
opened
Sep 26, 2018
Open
Document of tests
1
Assign taxonomy with blast, can be used for qiime
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Updated
Nov 27, 2020 - Python
Annotation helper tool for the manual curation of transposable element consensus sequences
annotation
structure
ltr
protein
blast
transposons
transposable-elements
tir
bioinformatics-tool
dot-plot
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Updated
Oct 20, 2021 - R
Course materials for the IBioIC Introduction to Bioinformatics training course
python
bioinformatics
structural-biology
jupyter-notebook
teaching
blast
mybinder
uniprot
teaching-materials
bioinformatics-course
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Updated
Jun 4, 2017 - HTML
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