AMPLab at UC Berkeley

snap Public
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data

C++ 252 69 21 9 Updated Jan 19, 2022
graphx Public
Former GraphX development repository. GraphX has been merged into Apache Spark; please submit pull requests there.

Scala 345 Apache-2.0 106 18 8 Updated Jan 7, 2022
zipg Public
A Memory-efficient Graph Store for Interactive Queries

Java 6 3 0 3 Updated Sep 1, 2021
ernest Public
Code for Ernest

Python 28 Apache-2.0 16 2 0 Updated Jan 8, 2021
smash Public
Benchmarking toolkit for variant calling

Python 46 BSD-2-Clause 16 4 1 Updated Oct 13, 2020
succinct-cpp Public
Succinct C++

C++ 20 5 13 1 Updated Sep 13, 2020
iolap Public

Scala 10 Apache-2.0 8 0 1 Updated Jul 23, 2020
SparkNet Public
Distributed Neural Networks for Spark

Scala 607 MIT 177 26 4 Updated Jul 23, 2020
succinct Public
Enabling queries on compressed data.

Java 265 Apache-2.0 69 5 2 Updated Feb 11, 2020
sprint Public
Sprint Transformations for RegEx queries

C++ 8 4 0 0 Updated Oct 1, 2019

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