vanheeringen-lab

Repository of the group of Simon van Heeringen @ Radboud University

seq2science Public
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

Python 97 MIT 19 33 (2 issues need help) 5 Updated Apr 29, 2022
genomepy Public
genes and genomes at your fingertips

Python 246 MIT 25 17 1 Updated Apr 26, 2022
gimmemotifs Public
Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.

Python 86 MIT 23 66 3 Updated Apr 25, 2022
pytxi Public

Python 0 MIT 0 0 0 Updated Apr 21, 2022
psap Public
CLI interface for the PSAP classifier. PSAP implements a RandomForest approach to predict the probability of proteins to mediate protein phase separation (PPS)

Python 2 MIT 2 1 1 Updated Apr 18, 2022
GroupMeetings Public

HTML 0 2 0 0 Updated Apr 12, 2022
ANANSE Public
Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples. http://anansepy.readthedocs.io

Python 57 MIT 12 34 3 Updated Apr 8, 2022
anansnake Public

Python 0 0 0 0 Updated Mar 30, 2022
genomepy_manuscript Public

HTML 0 0 0 0 Updated Jan 10, 2022
cfb_book Public
Textbook for the Computation for Biologists course @ Radboud University

Jupyter Notebook 1 0 0 0 Updated Oct 14, 2021

Pinned