#
dna
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DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
science
machine-learning
bioinformatics
deep-learning
genomics
genome
tensorflow
ngs
sequencing
dna
deep-neural-network
deepvariant
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Mar 7, 2022 - Python
Data intensive science for everyone.
docker
science
workflow
bioinformatics
pipeline
genomics
workflow-engine
ngs
sequencing
dna
usegalaxy
hacktoberfest
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Updated
May 11, 2022 - Python
tools for working with genome variation graphs
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Updated
May 6, 2022 - C++
Python and C++ code for reading and writing genomics data.
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Dec 9, 2021 - C++
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
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Mar 31, 2021 - Python
3d engine implementation in DNA code!
biology
dna
chemical-kinetics
cube
3d
chemical-reaction-networks
molecular-biology
3d-engine
chemical-reactions
raymarching
in-vitro
piperine
strand-displacement
molecular-programming
real-reactive-programming
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Nov 29, 2020
A Go package for engineering organisms.
bioinformatics
synthetic-biology
computational-biology
dna
genbank
fasta
molecular-biology
synbio
bioengineering
primer-design
golden-gate
dna-barcode
plasmids
dna-barcoding
codon-optimizer
genetic-engineering
sequence-assembly
engineering-organisms
sequence-hashing
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Apr 16, 2022 - Go
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
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May 27, 2020 - Julia
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
jupyter-notebook
dna
rosetta
rna-structure-prediction
protein-design
protein-folding
protein-structure-prediction
google-colab
pyrosetta
protein-docking
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Feb 22, 2022 - Jupyter Notebook
UGENE is free open-source cross-platform bioinformatics software
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May 11, 2022 - C++
victorlin
commented
Apr 28, 2022
Example: https://docs.nextstrain.org/projects/nextclade/en/stable/user/algorithm/07-quality-control.html
gets rendered as:
<img alt="Identification of private mutations" src="/docs/user/assets/algo_private-muts.png">and the absolute
t:bug
Type: bug, error, something isn't working
good first issue
Good for newcomers
help wanted
Extra attention is needed
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
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Dec 6, 2021 - Python
DNA sequence viewer supporting custom, GenBank, FASTA, NCBI accession, and iGEM input.
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Apr 25, 2022 - TypeScript
tools for genetic genealogy and the analysis of consumer DNA test results
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Updated
Mar 12, 2022 - Python
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
python
bioinformatics
jupyter
anaconda
simulation
biology
jupyter-notebook
dna
biopython
genbank
gel
fasta
jupyter-notebooks
anaconda-server-badge
pydna
gel-simulation
gibson-assembly
cloning-strategies
gel-electrophoresis
assembly-strategies
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May 9, 2022 - Jupyter Notebook
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
bioinformatics
chemistry
structural-biology
molecular-structures
protein-structure
artificial-intelligence
dna
protein
proteomics
docking
peptides
molecular-biology
protein-design
protein-protein-interaction
swarm-intelligence
structural-bioinformatics
protein-dna-interactions
bioinformatics-tool
glowworm-swarm-optimization
protein-docking
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Updated
May 9, 2022 - C
Raw dump of Kenneth Reitz's DNA Sequence, Ancestry, Genealogy, &c.
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Apr 12, 2022 - HTML
A fast 23andMe genome text file parser, now superseded by arv
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Updated
Nov 12, 2017 - Python
A curated list of awesome bioinformatics software.
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Updated
Dec 10, 2017
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See https://github.com/biopython/biopython/blob/master/Bio/SeqFeature.py and
__add__, need to do the same specifically for integer offsets.Workaround
feature + (-5)instead offeature - 5, see https://twitter.com/tomeraltman/status/1473764959347638273