bioconda

Aggregate results from bioinformatics analyses across many samples into a single report.

Structural variation caller using third generation sequencing

genes and genomes at your fingertips

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

Toolset for SV simulation, comparison and filtering

A flexible pipeline for complete analysis of bacterial genomes

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

🚀 seqfu - Sequece Fastx Utilities

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.

Chanjo provides a better way to analyze coverage data in clinical sequencing.

⛰ covtobed | Convert the coverage track from a BAM file into a BED file

Recommendations to contenarized your bioinformatics software

BioContainers Documentation.

Build a Reproducible Jupyter Workflow From Scratch (2017 NIH Hour of Code)

ProtGraph - A Graph-Generator for Proteins

Data analysis related to the bioconda paper

A quick overview of how to use Bioconda, and create recipes

Methods for training and interpretation of an ensemble of neural networks for multi-task functional prediction of accessibility or histone modifications from DNA sequence.

Containers for running ESM related tools