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Inline example plots in docs
#1664 opened Feb 19, 2021 by ivirshup
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439 Open 880 Closed
439 Open 880 Closed
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Spot coordinates in Spatial Transcriptomics
#2253 opened May 6, 2022 by julie-jch
show the mean of several genes in spatial scanpy figure
#2252 opened May 6, 2022 by sophieRAIBAUD
pixel coordinates from reading the 10X visium slide
#2251 opened May 5, 2022 by YuanningEric
no worked for categories_order of sc.pl.tracksplot
#2250 opened May 5, 2022 by wubaosheng
Add support for passing boolean columns in .obs when plotting clustermap or dendrogram.
#2249 opened May 2, 2022 by Imipenem
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Add "sort_by" in rank_genes_groups
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Store multiple Umap Coordinates
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#2244 opened Apr 27, 2022 by ViriatoII
1 task done
Problem with .highly_variable_genes
#2242 opened Apr 22, 2022 by dr-sayyadhury
KeyError: 'base' when running tl.rank_genes_groups
#2239 opened Apr 18, 2022 by naity2
3 tasks done
4
Issue running sc.pp.highly_variable_genes
#2236 opened Apr 14, 2022 by julie-jch
1 task
add a mask argument Area – API Enhancement ✨
#2234 opened Apr 13, 2022 by ivirshup 1.10.0
highly_variable_genes() with flavor="cell_ranger" fails there are less normalized dispersions than n_top_genes
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Description of "legend_loc" option in scanpy.pl.embedding is inaccurate or not implemented yet.
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3 tasks done
Bug in diffusion map plotting in 1.9.1?
#2227 opened Apr 6, 2022 by cbravo93
1 task
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1
10
Fix reference links in docs Area - Documentation 📒 Bug 🐛
#2216 opened Apr 5, 2022 by ivirshup 1.9.2
1
Illegal slicing argument for scalar dataspace when attempting to read 10x_h5 with version 1.9.0 Area - IO Bug 🐛 Needs info❔
#2203 opened Apr 2, 2022 by nadavyayon
2
"ConvergenceWarning" in sklearn when calling ”sc.tl.rank_genes_groups“ with method='logreg'
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1 of 3 tasks
Dotplot color annotation Area - Plotting 🌺 Enhancement ✨
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sc.tl.ingest does not work with Python 3.10
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Saving/reading .h5ad file results in altered adata.uns['log1p'] Bug 🐛
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Cannot import Scanpy Installation Windows
#2173 opened Mar 9, 2022 by charles-xu-ru
14
ProTip! Updated in the last three days: updated:>2022-05-06.