functional-annotation

Fast genome-wide functional annotation through orthology assignment

ATLAS - Three commands to start analyzing your metagenome data

Source ontology files for the Gene Ontology

An R package for performing STAAR procedure in whole-genome sequencing studies

Graph-based modeling environment for biology, including prototype editor and services

AmiGO is the public interface for the Gene Ontology.

This repository hosts the tracker for issues pertaining to GO annotations.

The Gene Ontology Helpdesk

R/Bioconductor package for optimized functional annotation of ChIP-seq data

GOMAP-Singularity is the containerized version of GOMAP

A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category

Tool for integrative gene-based association analysis using GWAS summary stats

A pipeline to go from raw sequencing data to high quality bins and pretty plots.

Multi-dimensional Annotation Class Integrative Estimation

An R package for performing MetaSTAAR procedure in whole-genome sequencing studies

(DEPRECATED) Short form matrix view of all GO annotations for a given gene

An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline

Human gene annotations for the oncology domain

This curation tool allows curators to make precise assertions as to when functions were gained and lost during evolution and record the evidence (e.g. experimentally supported GO annotations and phylogenetic information including orthology) for those assertions.