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opencobra / cobrapy

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cobra.test.create_test_model("salmonella") results in incorrect exchange reaction names

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jeremymchacon
jeremymchacon commented Aug 25, 2020

Hello maintainers of the amazing package,

I recently updated cobrapy and am experienced unexpected behavior with cobra.test.create_test_model("salmonella")

Two things are unusual:

  1. Now, many warnings are given during loading of the model, whereas none were given in a previous version. Here are a few of the warnings:

`Model does not contain SBML fbc package information.
SBML package

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SBML help-wanted good first issue
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weisscharlesj / SciCompforChemists

Star 59

Scientific Computing for Chemists text for teaching basic computing skills to chemistry students using Python, Jupyter notebooks, and the SciPy stack. This text makes use of a variety of packages including NumPy, SciPy, matplotlib, pandas, seaborn, NMRglue, SymPy, scikit-image, and scikit-learn.

python science chemistry book numpy chemical biochemistry scientific-computing scipy jupyterlab scientific simulations textbook jupyter-notebooks computing jupyter-lab nmrglue chemists
  • Updated Apr 15, 2022
  • Jupyter Notebook

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