MouseLand

facemap Public
matlab/python GUI for unsupervised video analysis of rodent behavior (capable of processing multiple camera views)

Jupyter Notebook 90 GPL-3.0 38 15 0 Updated Aug 2, 2022
suite2p Public
cell detection in calcium imaging recordings

Jupyter Notebook 230 GPL-3.0 181 64 (2 issues need help) 17 Updated Jul 30, 2022
pykilosort Public
WIP: Python port of Kilosort2

Python 41 GPL-2.0 21 25 (1 issue needs help) 2 Updated Jul 29, 2022
cellpose Public
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

Jupyter Notebook 596 BSD-3-Clause 212 24 5 Updated Jul 5, 2022
cellpose-napari Public
napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool

Python 26 BSD-3-Clause 16 9 0 Updated Jun 6, 2022
rastermap Public
A multi-dimensional embedding algorithm

Jupyter Notebook 93 GPL-3.0 25 9 1 Updated May 10, 2022
Kilosort Public
Fast spike sorting with drift correction for up to a thousand channels

MATLAB 241 GPL-2.0 153 194 4 Updated Mar 9, 2022
receptivefield-explorer Public
GUI to compute and explore receptive fields, primarily from calcium imaging recordings

Jupyter Notebook 10 0 2 0 Updated Jun 26, 2021
facemap-napari Public
napari plugin for facemap (www.github.com/mouseland/facemap) for processing behavioral data

Python 1 BSD-3-Clause 0 0 0 Updated May 31, 2021
stringer-pachitariu-et-al-2018a Public
Recordings of 10k neurons during spontaneous behaviors

MATLAB 41 12 1 1 Updated Apr 1, 2021

Popular repositories