Here are
188 public repositories
matching this topic...
ChIP-seq analysis notes from Ming Tang
Updated
Apr 29, 2021
Python
MACS -- Model-based Analysis of ChIP-Seq
Updated
Jun 10, 2022
Cython
Tools to process and analyze deep sequencing data.
Updated
May 18, 2022
Python
Customizable workflows based on snakemake and python for the analysis of NGS data
Updated
Jun 14, 2022
Python
A collection of Galaxy-related training material
Updated
Jun 15, 2022
HTML
ChIP-seq peak-calling, QC and differential analysis pipeline.
Updated
May 26, 2022
Nextflow
AQUAS TF and histone ChIP-seq pipeline
Updated
Aug 30, 2019
Java
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Updated
Jun 14, 2022
Python
a snakemake pipeline to process ChIP-seq files from GEO or in-house
Updated
Apr 17, 2020
Python
A graphical user interface for distributed data processing of high throughput genomics
Publication quality NGS track plotting
Updated
Jun 2, 2022
Python
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
Updated
Sep 13, 2021
Python
Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.
Updated
Apr 4, 2022
Python
Go / Golang Bioinformatics Library
Multi-omics analysis protocols by Lyu.
Updated
Jan 17, 2022
HTML
deepStats: a stastitical toolbox for deeptools and genomic signals
A python package and a set of shell commands to handle GTF files
Updated
Apr 29, 2022
Python
Tools for querying and analysis of genomic data
Updated
Jul 23, 2021
Perl
Summer school course materials collection
ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps
CWL tools and workflows for GGR
Updated
Oct 12, 2021
Common Workflow Language
Bioinformatics library in Kotlin
Updated
Jun 14, 2022
Kotlin
A robust model for quantitative comparison of ChIP-Seq data sets.
Updated
May 18, 2020
Python
A Python package for fast operations on 1-dimensional genomic signal tracks
Updated
Apr 3, 2020
Python
API for HOMER in R for Genomic Analysis using Tidy Conventions
Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set
Pipelines for NGS data preprocessing by the Bock lab and friends
Updated
Mar 16, 2021
Python
MAnorm2 for Normalizing and Comparing ChIP-seq Samples
AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
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