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38 Open 11 Closed
38 Open 11 Closed
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Issues list

gencore-0.17.2 incompatible with python 3.10, python 3.8, python 3.6 or python 2.7
#50 opened Jun 25, 2023 by Wangxin555
change 'nan' in output to 'NaN'
#49 opened Apr 9, 2023 by TomaszSuchan
in overlap position, gencore doesn't reset quality
#48 opened Mar 24, 2023 by wyy1234-github
gencore seems to have wrongly modified my SAM alignment record
#47 opened Feb 21, 2023 by jammywwh
Reads with identical UMIs and mapping coordinates output by Gencore
#45 opened Jun 22, 2022 by luederm
There are one or three reads with the same name after deduplication
#44 opened Jun 21, 2022 by bio-Tao
SAM file validation errors after running gencore
#43 opened May 27, 2022 by luederm
Mismatched UMI of a pair of reads
#42 opened Mar 7, 2022 by litun-fkby
1
ERROR: Wrong base with value 0
#41 opened Feb 16, 2022 by RainyEricYe
what is the max number of interval in a bed for QC report
#39 opened Nov 5, 2021 by xmzhuo
Prebuild versions of gencore in opengene.org with version history
#38 opened Oct 20, 2021 by lavauxt
gencore don't generate consensus read from two pair reads with reciprocal UMI ,such as UMI ATGC_GCAA and GCAA_ATGC
#36 opened Aug 6, 2021 by litun-fkby
EOF markers absent
#34 opened Mar 27, 2021 by pdimens
Gencore failed to process BAM generated by STAR aligner
#33 opened Mar 12, 2021 by k1197445
1
Data used in the paper?
#32 opened Mar 9, 2021 by cagaser
write read groups
#31 opened Jan 25, 2021 by antonkulaga
running speed very slow for me
#30 opened Jan 12, 2021 by bhinderb
Add option to never toss reads
#29 opened Nov 19, 2020 by FlorianErger
output read cluster information
#25 opened Aug 26, 2020 by gudeqing
SV calling
#24 opened Aug 14, 2020 by tyyiyi
Collapsing fails
#23 opened Jul 22, 2020 by tahuh
Feature request: support deduplication based on [contig]:[R1 coordinate] only
#22 opened Jul 8, 2020 by ijhoskins
3
Segmentation fault (core dumped) after loading contigs from BAM file
#21 opened Jun 15, 2020 by vmkalbskopf
Nanopore or Pacbio HiFi data
#19 opened May 16, 2020 by kokyriakidis
Is it intended action? The read2 flag was converted to read1 flag.
#17 opened Apr 28, 2020 by roh329
2
ProTip! What’s not been updated in a month: updated:<2023-10-15.