Population-scale genotyping using pangenome graphs
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Feb 22, 2022 - C++
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genotype
Here are 54 public repositories matching this topic...
Rare variant test software for next generation sequencing data
c-plus-plus
gwas
kernel
genetics
ngs
next-generation-sequencing
variants
meta-analysis
genotype
umich
skat
association-analysis
rare-variant
vcf-files
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Jan 26, 2022 - C++
tools for genetic genealogy and the analysis of consumer DNA test results
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Mar 12, 2022 - Python
Bayesian genotyper for structural variants
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Mar 6, 2021 - Python
mgatk: mitochondrial genome analysis toolkit
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Updated
Aug 31, 2021 - Python
Support Vector Structural Variation Genotyper
machine-learning
bioinformatics
genotype
structural-variation
genotyping-by-sequencing
de-novo-mutation
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Updated
May 29, 2020 - Python
A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data
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Mar 10, 2022 - Python
Framework for Interpretable Neural Networks
machine-learning
deep-learning
neural-network
genetics
neural-networks
genotype
interpretable-neural-networks
gennet
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Mar 4, 2022 - Jupyter Notebook
SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.
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Apr 5, 2019 - Python
Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
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Feb 8, 2022 - Python
Efficient compression and retrieve of genotype data with integer sparse matrices
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Oct 29, 2021 - R
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Mar 7, 2021 - Forth
Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.2, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy metrics like: IQS(Imputation Quality score), r2 (Pearson correlation), Concordance.
genetics
eagle
imputation
accuracy
genotype
phasing
imputation-accuracy
beagle
impute
minimac
shapeit
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Dec 2, 2021 - Python
Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C
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Mar 18, 2022 - Python
A simple python library to identify the most likely strain from the population
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Feb 18, 2022 - Python
Collecting Genotypes from ENA and make their SNPs
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Sep 27, 2021 - Python
A suite of tools for processing genotype data. Includes calling genotypes from .idat to plink (ped), sample/case-control variant QC steps, ancestry estimation. UNDER DEVELOPMENT
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Mar 16, 2022 - Python
A pipeline for detecting Somatic Insertion of DE novo RETROcopies
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Aug 13, 2021 - C
Analysis of genotype data from 23andMe DNA testing.
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Nov 8, 2018 - R
Polymorphic Edge Detection - An efficient polymorphism detector for NGS data
inversion
ngs
insertion
snp
polymorphism
k-mer
sequence-alignments
variant
somatic-mutations
genotype
deletion
ngstools
alignment-free-algorithm
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Mar 11, 2022 - Perl
Pipeline with lots of user input for processing SNP data towards ADMIXTURE and/or imputation
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Apr 8, 2018 - Python
Predict height by gender and genotypes using machine learning.
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Updated
Dec 4, 2017 - Python
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