omics

Multi-source Translation

A collection of awesome things regarding all omics.

Visual self-service analytics platform for big omics data.

Development repository for the Bioconductor package 'mixOmics '

compositional data analysis toolbox

🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data

Prize-Collecting Steiner Forests for Interactomes

Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis

Picotti lab data analysis package.

R package for High dimensional data analysis and integration with O2PLS!

An R package to plot interactive three-way differential expression analysis

Jigsaw-like AggMap: A Robust and Explainable Multi-Channel Omics Deep Learning Tool

OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.

Open-Source Software for Omic Data Analysis and Visualization

Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"

Framework for efficient high-dimensional association analyses.

PyIOmica (pyiomica) is a Python package for omics analyses.

A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)

The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following article: https://www.nature.com/articles/s41587-021-00879-7

Muon for Julia