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variant-sites

Here are 2 public repositories matching this topic...

btmartin721 / raxml_ascbias

Script for removing or counting invariant sites for the RAxML ascertainment bias corrections

phylogenetics correction filtering raxml phylogenetic-data dna-sequences sequence-alignment lewis variant-sites dna-sequence-analysis phylogenetic-analysis ascertainment-bias invariant-sites felsenstein stamatkis

Updated Aug 1, 2018
Python

Frahiriart / Phylosnipping

Pipeline which make phylogeny with sequence of different sample

snps pipeline biology network variants alignment snp variant phylogeny distance-matrices variant-sites network-phylogeny

Updated Sep 30, 2019
Perl

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