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256 public repositories
matching this topic...
.NET Decompiler with support for PDB generation, ReadyToRun, Metadata (&more) - cross-platform!
Full-screen console debugger for Python
Updated
May 26, 2022
Python
pdb++, a drop-in replacement for pdb (the Python debugger)
Updated
May 30, 2022
Python
A tool which allows you to edit source code of any MSVC C++ project live at runtime
A simple tutorial about effectively using pdb
Updated
Jan 8, 2022
Python
PDBRipper is a utility for extract an information from PDB-files.
📖 🔬 ☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Updated
Apr 27, 2022
Java
Neovim thin wrapper for GDB, LLDB, PDB/PDB++ and BashDB
Working with molecular structures in pandas DataFrames
Updated
May 13, 2022
Python
An open library for the analysis of molecular dynamics trajectories
Tool for PDB generation from IDA Pro database
Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format
Updated
Jun 4, 2022
Python
A parser for Microsoft PDB (Program Database) debugging information
A tool to make Windows builds reproducible.
Remote vanilla PDB (over TCP sockets).
Updated
Oct 8, 2020
Python
Syntax highlighting for computational biology
Updated
Apr 10, 2022
Shell
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to
📝 Adasme et al. (2021),
https://doi.org/10.1093/nar/gkab294
Updated
Apr 5, 2022
Python
A dependency-free cross-platform swiss army knife for PDB files.
Updated
Apr 21, 2022
Python
Updated
Feb 19, 2017
Python
A Python API for the RCSB Protein Data Bank (PDB)
Updated
Apr 26, 2022
Python
A cheatsheet for the Python Debugger (pdb)
Updated
May 24, 2022
Jupyter Notebook
Protein Secondary Structure predictor using Convolutional Neural Networks
Updated
May 26, 2022
Python
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
Updated
Jun 3, 2022
Groovy
A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
Updated
Jan 25, 2022
Julia
C-library for calculating Solvent Accessible Surface Areas
Monte Carlo and Molecular Dynamics Simulation Package
Remotely and collaboratively debug your Python application via an IRC channel.
Updated
Aug 20, 2016
Python
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https://github.com/cansarigol/pdbr/runs/5351140347?check_suite_focus=true