Query to reference mapping for single-cell genomics
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Updated
Oct 14, 2021 - Jupyter Notebook
#
rna-seq-analysis
Here are 162 public repositories matching this topic...
An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study
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Updated
Jun 1, 2021 - Jupyter Notebook
Visual self-service analytics platform for big omics data.
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Updated
Oct 18, 2021 - R
Scalable RNA-seq analysis
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Updated
Jan 12, 2021 - Python
integrated RNA-seq Analysis Pipeline
rna-seq
pipeline
gene-expression
rna-seq-analysis
differential-expression
transcript-quantification
single-cell-rna-seq
irap
bulk-rna-seq
exon-quantification
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Updated
Feb 6, 2019 - R
This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
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May 21, 2021 - R
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
gui
r
shiny
reproducible-research
gene-expression
data-visualization
bioconductor
transcriptome
user-friendly
data-exploration
transcriptomics
rna-seq-analysis
pathway-analysis
rna-seq-data
bioconductor-package
functional-enrichment-analysis
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Updated
Oct 13, 2021 - R
pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
r
shiny
reproducible-research
bioconductor
transcriptome
user-friendly
rna-seq-analysis
principal-components
rna-seq-data
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Updated
Sep 20, 2021 - R
Reference-guided transcript discovery and quantification for long read RNA-Seq data
r
bioconductor
transcriptomics
rna-seq-analysis
transcript-quantification
bambu
long-reads
nanopore-sequencing
transcript-reconstruction
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Updated
Oct 19, 2021 - R
Clustering cells from single cell RNA seq assays
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Updated
Nov 19, 2018 - Jupyter Notebook
Tutorials, workflows, and convenience scripts for Single Cell Portal
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Updated
Oct 18, 2021 - Python
Rails/Docker application for the Broad Institute's single cell RNA-seq data portal
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Oct 18, 2021 - Ruby
The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.
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Apr 10, 2021 - Shell
SNP-free RNA editing Identification Toolkit
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Jul 8, 2019 - Python
GREIN : GEO RNA-seq Experiments Interactive Navigator
processing
rna-seq
r
geo
graphical-interface
gene-expression
bioinformatics-pipeline
interactive-analysis
shiny-apps
rna-seq-analysis
rna-seq-data
interactive-visualizations
bioinformatics-analysis
gene-expression-omnibus
rna-seq-pipeline
geo-data-processing
grein
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May 28, 2019 - HTML
Pipeline for annotating genomes using long read transcriptomics data with stringtie and other tools
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Updated
Jan 4, 2021 - Python
Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs
modification
rna-seq-analysis
mirna
tsrna
trf
trna-derived-small-rna
trna-halves
small-rna
rna-seq-mapping
rrna-derived-small-rna
pirna
rsrna
trna-fragment
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Mar 30, 2021 - Perl
Snakemake based pipeline for RNA-Seq analysis
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Jun 26, 2019 - R
UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets
workflow
pipeline
nextflow
rna
transcriptome
rna-seq-analysis
differential-expression
lncrna
non-coding
nf-core
long-non-coding
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Updated
Jul 13, 2021 - Nextflow
Data-driven Network-based Bayesian Inference of Drivers
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Updated
Sep 17, 2021 - R
Interactive Differential Expression AnaLysis - DE made accessible and reproducible
rna-seq
r
shiny
reproducible-research
bioconductor
user-friendly
rna-seq-analysis
differential-expression
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Updated
Oct 15, 2021 - R
Make rapid visualizations of RNA-seq data in R
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Updated
Jul 15, 2019 - R
interactive Multi Objective K-mer Analysis
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Oct 12, 2021 - JavaScript
Fast in-silico normalization algorithm for NGS data
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Updated
Oct 7, 2021 - C++
bioinformatics
rna-seq
gene-expression
bioinformatics-pipeline
transcriptomics
rna-seq-analysis
circrna
rna-seq-data
circular-rna
circseq
rna-seq-pipeline
circrnas
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Jun 17, 2020 - R
Workflow management system for the automated and distributed analysis of large-scale experimental data.
bioinformatics
bioinformatics-pipeline
rna-seq-analysis
workflow-management-system
cluster-computing
big-data-analytics
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Updated
May 12, 2021 - Java
Personalized Regression
genomics
linear-regression
personalization
logistic-regression
transcriptomics
rna-seq-analysis
personalized-regression
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Dec 29, 2019 - Python
An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts
rna-seq
rna-seq-analysis
circrna
circular-rna
sequencing-rna
splicing-visualization
splicing-analyses
backsplicing
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Jul 2, 2020 - R
scGEAToolbox: Matlab toolbox for single-cell gene expression analyses
workflow
scrna-seq
analyses
rna-seq-analysis
tsne
matlab-toolbox
trajectory
dimensionality
phate
demo-scripts
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Updated
Oct 18, 2021 - MATLAB
a web-based R shiny application that wraps DESeq2 R package
visualization
bioinformatics
rna-seq
r
shiny
rshiny
deseq2
rna-seq-analysis
shinyapps
webapplication
bulk-rna-seq
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Apr 19, 2020 - R
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