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dmri

Here are 20 public repositories matching this topic...

dPys / PyNets

A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

workflow metrics optimization data-frame networkx ensemble-learning networks dmn fmri decision-trees nilearn fuzzy-logic covariance multiverse brain-connectivity tractography nipype dipy gridsearch graph-neural-networks dmri ensemble-sampling

Updated May 30, 2022
Python

MIC-DKFZ / MITK-Diffusion

MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit

simulation dicom registration segmentation modelling brain peak diffusion-mri tractography denoising dmri fiber-tracts diffusion-tensor qballs brainextraction mitk-diffusion supplement-181 tractseg diffusion-mri-simulation fiberfox

Updated May 17, 2022
C++

connectomicslab / connectomemapper3

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD data, and preprocessed EEG to multi-resolution brain parcellation with corresponding connection matrices.

python pipelines eeg fmri bids brain connectome parcellation dmri bidsapp bids-apps chuv

Updated May 21, 2022
Python

delucaal / MRIToolkit

matter tracking clustering mri csd white fiber brain diffusion-mri tractography ivim relaxometry dmri inversion-recovery diffusion-kurtosis-imaging diffusion-tensor-imaging epi-correction

Updated Apr 11, 2022
MATLAB

carpentries-incubator / SDC-BIDS-dMRI

Open

Make verbatim/code and type face style consistent

jhlegarreta commented Nov 6, 2021

Verbatim/code and type face style is not consistent across the episodes. It should be made consistent by choosing one style:

HMTL <code> vs. Markdown backticks vs. double backticks for verbatim/code mark up.
Star (*) vs. underscore (_) and their double counterparts for italics/bold faces

Read more

help wanted good first issue type:formatting

Open

Reuse local variables to create output directories in preprocessing episode

Open

Add a pre-commit hook to format the Markdown files

1

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MRtrix3Tissue

3Tissue / MRtrix3Tissue

MRtrix3Tissue adds capabilities for 3-Tissue CSD modelling and analysis to a complete version of MRtrix3.

csd diffusion-mri tractography dmri mrtrix3 3-tissue 3-tissue-csd mrtrix

Updated Nov 26, 2020
C++

treanus / KUL_NIS

KUL/UZ NeuroImaging Suite. A set of tools for brain and spine MRI analysis.

image-processing neuroimaging fmri dmri

Updated May 27, 2022
Shell

PyDesigner

m-ama / PyDesigner

A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1

dwi diffusion-maps diffusion-mri tractography diffusion-preprocessing kurtosis dmri dmriprep

Updated Mar 22, 2022
Python

Jinboasltw / jinbo_brain_book

Record all learned knowledge of MRI

asl mri fmri dmri

Updated Apr 3, 2021
Python

multinetlab-amsterdam / data_preprocessing

This repo contains preprocessing scripts used in the lab, organized (mainly) by imaging modality.

meg neuroimaging fmri preprocessing resting-state dmri

Updated Mar 24, 2022
Jupyter Notebook

Hyedryn / elikopy

ElikoPy is Python library aiming at easing the processing of diffusion imaging for microstructural analysis.

python-library diamond preprocessing fsl dti noddi dmri tbss microstructure-fingerprinting diffusion-imaging

Updated May 31, 2022
Python

JonGant / DWIS

Diffusion Weighted Image Simulator

python dmri simulated-images

Updated Feb 11, 2022
Python

lorifranke / FiberStars

Source code for FiberStars, a visualization tool for comparing dMRI data of multiple subjects.

visualization tool reactjs scientific-visualization medical-imaging tractography dmri

Updated Jun 25, 2021
JavaScript

la-boite / diffusion_ODF

diffusion-mri dmri

Updated Mar 30, 2022

karanaggarwal1994 / life-gpu-opt

LiFE-GPU-opt software is an optimized implementation of the compute-intensive matrix operations of the LiFE algorithm for GPUs.

neuroscience computational-neuroscience connectome tractography dmri

Updated May 25, 2019
MATLAB

GewoonMaarten / spherical-dmri-conv

Sub-sampling on multi-dimensional diffusion MRI with rotation equivariance.

pytorch geometric-deep-learning dmri rotation-equivariance

Updated Apr 19, 2022
Jupyter Notebook

drombas / streamlines-gsoc

Experiments related with streamlines carried out as part of GSoC 2021.

registration google-summer-of-code diffusion-mri tractography incf dipy dmri streamline-analysis

Updated Sep 24, 2021
Jupyter Notebook

renelabounek / sc-dmri-myelopathy

Folder containing all implemented or developed quantitative spinal cord imaging pipelines and data analyses

microstructure diffusion-mri magnetic-resonance-imaging spinal-cord ball-and-stick dmri spinal-cord-injury diffusion-tensor-imaging myelopathy

Updated Oct 26, 2020
MATLAB

KUL-Radneuron / KUL_FWT

Automated tractography using MRTrix3 CSD based on subject-specific parcellations from FreeSurfer and MultiScaleBrainParcellator

tractography dmri

Updated Jan 7, 2022
Shell

ServinDC / ratCortex-dMRIstreams

Scripts to process dMRI volumes and create cortical streamlines in rat data.

streamlines dmri rat-cortex

Updated Sep 10, 2021
Python

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