mr-c

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Michael R. Crusoe mr-c

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Common Workflow Language co-founder & CWL Project Lead. Debian Developer volunteer for the Debian-Med (bioinformatics) team. #SciWorflows #FreeOpenStandards

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Pinned

common-workflow-language/common-workflow-language Public

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

Common Workflow Language 1.4k 202
common-workflow-language/cwltool Public

Common Workflow Language reference implementation

Python 285 194
common-workflow-language/schema_salad Public

Semantic Annotations for Linked Avro Data

Python 63 53
shouldacite Public

Should you cite this software?

CSS 25 2
common-workflow-language/cwlprov Public

Profile for provenance research object of a CWL workflow run

12 2

1,888 contributions in the last year

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Activity overview

Contributed to common-workflow-language/cwltool, common-workflow-lab/wdl-cwl-translator, common-workflow-language/schema_salad and 173 other repositories

Contribution activity

July 2022

Created 35 commits in 11 repositories

Created 1 repository

mr-c/FAIR-BioRS-guidelines Jul 15

Created a pull request in common-workflow-language/governance that received 7 comments

1st draft of fundraising plan

+68 −0 • 7 comments

Opened 19 other pull requests in 9 repositories

common-workflow-language/schema_salad 8 merged

set version for the docker build Jul 21
3rd attempt to fix release process Jul 21
move stubs dir, fix hidden issues Jul 21
docs: fetch version correctly Jul 17
release: really fix setting the version Jul 17
explicit build-deps; tag before making release wheels Jul 17
bump minimum setuptools version Jul 17
upgrade & fix binary wheel build+publish Jul 16

galaxyproject/galaxy 2 merged 1 open

[22.05] Fixed tool_utils types & schema-salad pin Jul 23
type hints that cwltool used to carry Jul 22
mark galaxy packages as containing typing information Jul 22

common-workflow-language/user_guide 2 merged

Link to cwl-patterns repo Jul 11
reference correct branch, remove carpentries refs Jul 7

common-workflow-language/cwl-upgrader 1 merged

Release v1.2.3 Jul 20

common-workflow-language/cwl-website 1 merged

add CACM paper to timeline Jul 19

common-workflow-language/cwl-utils 1 merged

release v0.14 Jul 15

fairdataihub/FAIR-BioRS-guidelines 1 open

CLIs should self-document using CWL Jul 15

common-workflow-language/cwltool 1 merged

Ignore flake8-bugbear false positives Jul 13

common-workflow-language/common-workflow-language 1 merged

add CACM paper Jul 7

Reviewed 15 pull requests in 9 repositories

galaxyproject/galaxy 3 pull requests

common-workflow-language/cwl-website 3 pull requests

Bump tzinfo from 1.2.9 to 1.2.10 in /content Jul 22
Fix typo Jul 2
Add DataPLANT to user-gallery Jul 2

common-workflow-language/cwltool 3 pull requests

common-workflow-language/schema_salad 1 pull request

Fix release tests Jul 21

common-workflow-language/governance 1 pull request

1st draft of fundraising plan Jul 21

common-workflow-lab/wdl-cwl-translator 1 pull request

Bump mypy from 0.961 to 0.971 Jul 20

DataBiosphere/toil 1 pull request

Bump mypy from 0.960 to 0.971 Jul 20

common-workflow-language/cwl-v1.2 1 pull request

typos Jul 17

common-workflow-language/cwl-utils 1 pull request

Removed cwltool deps Jul 3

Created an issue in ResearchObject/workflow-run-crate that received 5 comments

cwlprov_to_crate: test converting cwlprovs created for each CWL conformance tests

https://github.com/common-workflow-language/cwl-v1.2/blob/1.2.1_proposed/CONFORMANCE_TESTS.md @mr-c will test creation of the CWLProv RO Bundles (f…

5 comments

Opened 8 other issues in 6 repositories

fairdataihub/FAIR-BioRS-guidelines 2 open

common-workflow-language/cwl-v1.2 2 open

orchest/orchest 1 open

import and/or export standards-based workflows Jul 21

common-workflow-library/bio-cwl-tools 1 open

copy resource reqs from Galaxy's TPV Jul 19

RalfG/python-wheels-manylinux-build 1 open

.git directory not mounted into docker container, breaks version detection Jul 16

common-workflow-language/user_guide 1 closed

link to the cwl-patterns resource Jul 11