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dwi

Here are 16 public repositories matching this topic...

IBT-FMI / SAMRI

Small Animal Magnetic Resonance Imaging via Python.

registration neuroimaging fmri bids dwi biomedical fsl functional-connectivity rodent small-animals

Updated Nov 8, 2021
Python

the-virtual-brain / tvb-recon

Tools for creating full TVB models from individual anatomical scans

simulation neuroscience mri connectivity neuroinformatics dwi

Updated Feb 19, 2021
Python

lrq3000 / csg_mri_pipelines

MRI preprocessing and analysis pipelines and tools for the study of disorders of consciousness

python ascii regexp regular-expression mri unicode-characters spm fmri dwi dti fmri-preproc fmri-data-analysis conn

Updated Jun 1, 2021
Jupyter Notebook

GBSS

arash-n / GBSS

Gray-matter Based Spatial Statistics

mri dwi microstructure diffusion gray-matter gbss noddi multi-shell

Updated Jan 28, 2021
Shell

rcruces / MRI_analytic_tools

Pipelines and tools for MRI analysis

dwi connectome freesurfer

Updated Oct 22, 2020
HTML

carpentries-incubator / SDC-BIDS-dMRI

Open

Make verbatim/code and type face style consistent

jhlegarreta commented Nov 6, 2021

Verbatim/code and type face style is not consistent across the episodes. It should be made consistent by choosing one style:

HMTL <code> vs. Markdown backticks vs. double backticks for verbatim/code mark up.
Star (*) vs. underscore (_) and their double counterparts for italics/bold faces

Read more

help wanted good first issue type:formatting

Open

Reuse local variables to create output directories in preprocessing episode

Open

Add a pre-commit hook to format the Markdown files

1

Find more good first issues

cwatson / mri_library

Scripts for MRI preprocessing

pipeline slurm mri slice neuroimaging dwi brain bid hpc-applications diffusion-mri tractography dti

Updated Oct 11, 2020
Shell

PyDesigner

m-ama / PyDesigner

A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1

dwi diffusion-maps diffusion-mri tractography diffusion-preprocessing kurtosis dmri dmriprep

Updated Mar 2, 2022
Python

courtois-neuromod / anat-processing

Pipeline to process anatomical data, including microstructure metrics from DWI and MT data

workflow preprocessing dwi anatomical-mri

Updated Aug 12, 2021
Nextflow

esinkarahan / ATA

Along Tract Analysis of Diffusion Weighted Images

visualization volume-rendering dwi microstructure tractography skeletonization noddi

Updated Aug 16, 2021
MATLAB

anindox8 / 2D-RetinaNet-for-Prostate-Localization-in-mpMRI

Fully supervised, healthy/malignant prostate detection in multi-parametric MRI (T2W, DWI, ADC), using a modified 2D RetinaNet model for medical object detection, built upon a shallow SEResNet backbone.

deep-learning supervised-learning adc convolutional-neural-networks dwi prostate retinanet prostate-cancer tensorflow-estimator seresnet 2d-detection mri-data tensorflow-keras t2w

Updated Sep 30, 2020
Python

stijnimaging / UTAP_WP1

Processing UHF MRI 🧠 data

Updated Feb 14, 2022
Shell

alexpron / article_central_sulcus_connectivity

Code used for study design, MRI data processing, statistical analysis and figures in the article U-shape short-range extrinsic connectivity organisation around the human central sulcus

mri connectivity dwi brain u-fibres

Updated May 9, 2021
Python

brainlife / plab

Pestilli Lab Homepage

science behavior data-science human computational-neuroscience mri vision modelling fmri reproducibility dwi brain aging alzheimers-disease tractography magnetic-resonance-imaging concussion white-matter

Updated Dec 7, 2021
HTML

ntnu-mr-cancer / T2-DWI

Fitting of three diffusion models to data acquired using combined T2-DWI.

mri adc t2 mri-images dwi diffusion prostate prostate-cancer echo-time diffusion-components t2-dwi

Updated Jul 17, 2021
MATLAB

barrysir / stepmania-parsing-code

Experiment to pull out the simfile parsing code from Stepmania's source

parsing stepmania sm dwi ssc

Updated Sep 10, 2021
C++

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