Here are
419 public repositories
matching this topic...
Official git repository for Biopython (originally converted from CVS)
Updated
Sep 22, 2022
Python
Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
Updated
Sep 19, 2022
Python
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
Updated
Jul 22, 2022
Python
RAxML Next Generation: faster, easier-to-use and more flexible
Bayesian Evolutionary Analysis by Sampling Trees
Updated
Sep 18, 2022
Java
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
Updated
Nov 19, 2021
Python
MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:
HyPhy: Hypothesis testing using Phylogenies
Updated
Sep 20, 2022
HyPhy
Efficient phylogenomic software by maximum likelihood
Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction
Updated
Sep 21, 2022
Jupyter Notebook
Bayesian Evolutionary Analysis Sampling Trees
Updated
Sep 21, 2022
Java
PhyML -- Phylogenetic estimation using (Maximum) Likelihood
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
Updated
Dec 6, 2021
Python
Population-scale genomics
Updated
Sep 22, 2022
Python
phylogenetics tools for linux (and other mostly posix compliant) computers
Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
Ultrafast Sample Placement on Existing Trees
Streamlining phylogenomic data gathering, processing and visualization
Updated
Sep 26, 2018
Python
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
Updated
Sep 20, 2022
TypeScript
baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).
Updated
Jan 25, 2022
Python
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