Single cell perturbation prediction
Python 174 43
Reference mapping for single-cell genomics
Jupyter Notebook 209 34
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
Jupyter Notebook 917 364
RNA Velocity generalized through dynamical modeling
Python 282 80
This project is work in progress! https://www.sc-best-practices.org
Jupyter Notebook 48 4
CellRank for directed single-cell fate mapping
Fit generalized linear models in python.
Electronic Health Record Analysis with Python.
Analysis of 4i data from CAMPA manuscript
Conditional Autoencoders for Multiplexed Pixel Analysis
Benchmarking analysis of data integration tools
Conversion between scRNA-seq objects
Perturbation Analysis in the scverse ecosystem.
Learning cell communication from spatial graphs of cells