neuron

NEURON Simulator

Brain Modeling Toolkit

Simulator optimized for large scale neural network simulations.

📝 Manage your Zettelkasten in {n}vim.

pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files

A template to get started with neuron

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.

Probabilistic question-asking system: the program asks, the users answer. The minimal goal of the program is to identify what the user needs (a target), even if the user is not aware of the existence of such a thing/product/service.

A MATLAB neuron simulator. Very fast (written in C++). Flexible (fully object oriented). Immediate (live manipulation in MATLAB). Comes with a powerful parameter optimizer. Get started ➡️

Short undergraduate course taught at University of Pennsylvania on computational and theoretical neuroscience. Provides an introduction to programming in MATLAB, single-neuron models, ion channel models, basic neural networks, and neural decoding.

A virtual optogenetics laboratory

The Blue Brain BioExplorer (BBBE) is a tool for scientists to extract and analyze scientific data from visualization and interactive exploration

A neovim plugin written in lua to interact with the neuron Zettelkasten software.

Tutorial for understanding how to use NEURON simulation environment

MediaTek's TFLite delegate

A python and C++ library for reading and writing neuronal morphologies

Python library to interface with CATMAID servers. Fully interoperable with navis.

A curated list of awesome cns frameworks, libraries, and software + First class pure python Tutorial Series for Spiking Neural Networks 🔥

Language server implementation for neuron