singularity-containers

Here are 48 public repositories matching this topic...

nextflow-io / nextflow

A DSL for data-driven computational pipelines

docker groovy hello aws cloud bioinformatics pipeline nextflow hpc reproducible-research workflow-engine slurm pipeline-framework sge singularity reproducible-science dataflow singularity-containers

Updated Oct 21, 2022
Groovy

singularityhub / sregistry

Star

server for storage and management of singularity images

registry containers management singularity singularity-containers singularityhub

Updated Oct 13, 2022
JavaScript

singularityhub / singularityhub.github.io

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Container tools for scientific computing! Docs at https://singularityhub.github.io/singularityhub-docs

registry website documentation containers container hub singularity-containers

Updated Jun 29, 2022
HTML

singularityhub / singularity-python

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command line tool for working with singularity hub and singularity containers

linux hpc containers container singularity-containers

Updated Oct 28, 2020
Python

NIH-HPC / singularity-examples

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example singularity definition files and demos

singularity-containers

Updated Jun 14, 2018
Shell

intel / HPC-containers-from-Intel

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Intel HPC Containers using Singularity

cloud hpc cluster singularity-containers

Updated Apr 29, 2021

sci-f / sci-f.github.io

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The Scientific Filesystem Specification and Documentation

science containers singularity reproducibility singularity-containers competitive

Updated Oct 13, 2020
CSS

BU-ISCIII / nextflow-scif

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This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.

nextflow docker-container docker-image recipe singularity singularity-containers nextflow-scif nextflow-pipelines scif-recipe nextflow-workflow

Updated Feb 25, 2019
HTML

vsoch / singularity-scientific-example

Sponsor

Star

example analysis with Singularity Hub and Docker containers run on local HPC and cloud providers

aws ec2 genomics hpc singularity gce singularity-containers google-compute

Updated Aug 10, 2017
Jupyter Notebook

singularityhub / stools

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singularity container tools for continuous integration and quality assessment

qa continuous-integration ci containers singularity clair scanning singularity-containers

Updated Jan 3, 2022
Python

jlboat / BioinfoContainers

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Various Singularity recipes I've used to generate containers

bioinformatics singularity-containers singularityhub sigularity

Updated Sep 30, 2020

supercontainers / sc19-tutorial

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Getting Started with Containers on HPC

tutorial hpc containers singularity singularity-containers containerization shifter

Updated Nov 17, 2019
C

QuentinLetourneur / Let-it-bin

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Optimize workflow for binning metagenomic short reads from multiple samples

nextflow binning singularity-containers metagenomic-analysis

Updated Mar 18, 2020
Nextflow

singularityhub / singularity-tunel

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command line tool for general HPC functions using Singularity containers

python flask containers singularity container-management singularity-container singularity-containers

Updated Dec 6, 2021
CSS

kinow / cylc-singularity

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Singularity containers for Cylc

docker workflow containers scheduler singularity singularity-container singularity-containers cylc

Updated Dec 29, 2019
Roff

vsoch / singularity-nginx

Sponsor

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web application to serve (simple) singularity images

nginx singularity singularity-container singularity-containers

Updated Mar 19, 2017
Python

c3se / containers

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The main platform for sharing all the information about AI/HPC-related containers at C3SE. See also the included tutorial to get started.

docker hpc singularity-containers

Updated Oct 20, 2022

singularityhub / builders

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these are the build scripts run by the robot builders, chosen by the user for a given build

builder tools container singularity singularity-containers

Updated Mar 22, 2018
CSS

sci-f / apps

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Modular application recipes for the Scientific Filesystem (SCIF)

apps singularity open-science singularity-container singularity-containers scientific-containers sci-f

Updated Apr 10, 2020
CSS

CHRUdeLille / vep_containers

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VEP environments containerized for singularity

recipes singularity singularity-containers singularity-hub ensembl-vep

Updated Aug 23, 2018
Shell

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