genome

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Here are 365 public repositories matching this topic...

ivanseidel / IAMDinosaur

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🦄 An Artificial Inteligence to teach Google's Dinosaur to jump cactus

neural-network genome genetic-algorithm artificial-intelligence dino google-dinosaur

Updated Feb 7, 2018
JavaScript

google / deepvariant

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DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

science machine-learning bioinformatics deep-learning genomics genome tensorflow ngs sequencing dna deep-neural-network deepvariant

Updated Jun 13, 2022
Python

broadinstitute / gatk

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Official code repository for GATK versions 4 and up

science bioinformatics spark genomics genome ngs sequencing dna gatk

Updated Oct 11, 2022
Java

primaryobjects / AI-Programmer

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Using artificial intelligence and genetic algorithms to automatically write programs. Tutorial: http://www.primaryobjects.com/cms/article149

c-sharp programming-language ai genome genetic-algorithm program-synthesis artificial-intelligence genetic-programming genetic-algorithms fitness-score

Updated Oct 7, 2020
C#

brentp / mosdepth

Sponsor

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fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

coverage nim genome sequencing depth wgs hacktoberfest exome nim-lang

Updated May 2, 2022
Nim

tariqdaouda / pyGeno

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Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Updated Sep 16, 2021
Python

jerryji1993 / DNABERT

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DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

nlp machine-learning natural-language-processing deep-learning genome gpu sequence kmer dnabert-model kmer-format

Updated May 10, 2022
Python

vanheeringen-lab / genomepy

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genes and genomes at your fingertips

python genome ensembl bioconda ucsc ncbi

Updated Oct 4, 2022
Python

bcgsc / abyss

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🔬 Assemble large genomes using short reads

science c-plus-plus bioinformatics genome bloom-filter assembler scaffold openmp mpi

Updated Jun 22, 2022
C++

bernatgel / karyoploteR

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karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

bioinformatics genome data-visualization rstats bioconductor genomics-visualization plotting-in-r

Updated Jul 13, 2022
R

genometools / genometools

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GenomeTools genome analysis system.

ruby python c library bioinformatics lua annotation genomics genome gff3 repeats genometools toolkit

Updated May 10, 2022
C

MariaNattestad / Ribbon

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A genome browser that shows long reads and complex variants better

visualization bioinformatics genomics genome

Updated Aug 20, 2022
JavaScript

Gaius-Augustus / Augustus

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Genome annotation with AUGUSTUS

gene annotation genome discovery prediction

Updated Sep 24, 2022
C++

alekseyzimin / masurca

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bioinformatics genome assembly masurca

Updated Oct 4, 2022
M4

aquaskyline / SOAPdenovo2

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Next generation sequencing reads de novo assembler.

bioinformatics genome assembly computational-biology soapdenovo

Updated Apr 19, 2021
C

broadinstitute / viral-ngs

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Viral genomics analysis pipelines

genomics genome variant-calling bam genome-sequencing illumina fastq genome-assembly variant-annotations viral-ngs viral

Updated Nov 3, 2020
Python

ropensci / biomartr

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Genomic Data Retrieval with R

r genomics genome metagenomics rstats genome-annotation r-package meta-analysis genome-retrieval biomart database-retrieval ncbi-genbank ensembl-servers sequenced-genomes proteome peer-reviewed

Updated Apr 30, 2022
R

bcgsc / NanoSim

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Nanopore sequence read simulator

simulator genome transcriptome oxford-nanopore nanopore-sequencing

Updated Oct 7, 2022
Python

lmdu / pyfastx

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a python package for fast random access to sequences from plain and gzipped FASTA/Q files

python bioinformatics genome biology assembly dna fasta sequence fastq

Updated Jun 27, 2022
C

Nextomics / NextPolish

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Fast and accurately polish the genome generated by long reads.

genome assembly polish

Updated Jul 7, 2022

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