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22 Open 303 Closed
22 Open 303 Closed
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Issues list

Bioconda GTDB-Tk reference data install issue
#435 opened Sep 20, 2022 by kalen-rasmussen
de_novo_wf error error Help required for a GTDB-Tk error.
#433 opened Sep 14, 2022 by Beb26
Write debug file on exception enhancement
#432 opened Sep 11, 2022 by aaronmussig
I got the following error while running classify_wf
#431 opened Sep 11, 2022 by aaronmussig
1
Understanding alphabetical suffixes in classification
#430 opened Sep 5, 2022 by higaredavm
1
de_novo_workflow fails to parse gtdb classify output
#428 opened Sep 1, 2022 by adityabandla
Using GTDB-TK for a databas of partial bacterial genome
#426 opened Aug 21, 2022 by mkoohim
gtdbtk.exceptions.PplacerException: An error was encountered while running pplacer.
#425 opened Aug 18, 2022 by mattoslmp
1
Starting pplacer.pplacer: loadlocale.c:129: _nl_intern_locale_data: Assertion `cnt < (sizeof (_nl_value_type_LC_TIME) / sizeof (_nl_value_type_LC_TIME[0]))' failed error Help required for a GTDB-Tk error.
#423 opened Aug 10, 2022 by sannareddyk
1 of 3 tasks
1
Hanging on classify_wf and TIGRFam error Help required for a GTDB-Tk error.
#420 opened Jul 27, 2022 by cjfields
2 of 5 tasks
3
Add warning summary in the log file enhancement
#417 opened Jul 12, 2022 by pchaumeil
Number of classified reads
#395 opened May 13, 2022 by natchaphon602
4
Subroutines for classify enhancement
#358 opened Nov 8, 2021 by SilasK
1
Extracting trimmed alignments for specific markers enhancement
#305 opened Feb 1, 2021 by wwood
2
Multithread alignment masking enhancement
#259 opened Jun 4, 2020 by aaronmussig
Remove requirement that all fasta input files have the same extension enhancement
#253 opened May 13, 2020 by jdwinkler-lanzatech
2
Unnecessary computation in de novo workflow enhancement
#243 opened Apr 20, 2020 by dparks1134
Establish novelty of user genomes enhancement
#233 opened Mar 13, 2020 by dparks1134
Add checkpointing enhancement
#207 opened Dec 12, 2019 by aaronmussig
Non-parametric bootstraps enhancement
#116 opened Apr 17, 2019 by dparks1134
NCBI Taxonomy Names in output
#61 opened Dec 12, 2018 by elizabethmcd
9
Flag to allow genomes to be supplied as called genes enhancement
#13 opened Feb 27, 2018 by dparks1134
2
ProTip! What’s not been updated in a month: updated:<2022-08-28.