Versatile open-source tool for microbiome analysis
Accurate sample inference from amplicon data with single nucleotide resolution
Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
A robust and fast clustering method for amplicon-based studies
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Protist Ribosomal Reference database (PR2) - SSU rRNA gene database
R mased batch sequence downloader, with primer development and in silico evaluation capabilities
This repository contains CO1 reference sets that can be used with the RDP Classifier to classify CO1 metabarcode sequences.
Environmental DNA metabarcoding taxonomic identification
A python package to query different databases of boldsystems.org
Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees
Dadaist2
Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences
metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
This repository contains the scripts used to retrieve and analyze the data reported in Porter & Hajibabaei 2018 bioRxiv doi: https://doi.org/10.1101/353904
A pipeline to create reference databases for arbitrary markers and taxonomic groups from NCBI data
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