sequence-search

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Here are 9 public repositories matching this topic...

soedinglab / MMseqs2

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MMseqs2: ultra fast and sensitive search and clustering suite

bioinformatics taxonomy metagenomics alignment sequence-clustering profile-search sequence-search linclust mmseqs blast

Updated Oct 21, 2022
C

soedinglab / hh-suite

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Remote protein homology detection suite.

opensource bioinformatics cpp protein-structure simd alignment profile-search sequence-search hh-suite hhblits profile-profile-search hhsearch hhpred viterbi

Updated Sep 19, 2022
C

proteinevolution / Toolkit

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The MPI Bioinformatics Toolkit

open-source bioinformatics akka structural-biology protein-structure typelevel computational-biology play-framework web-application reactive-programming profile-search sequence-search profile-profile-search

Updated Oct 21, 2022
Scala

Kingsford-Group / kourami

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Kourami: Graph-guided assembly for HLA alleles

sequence-search wgs hla hla-database imgt hla-typing

Updated May 21, 2019
Java

soedinglab / MMseqs2-App

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MMseqs2 app to run on your workstation or servers

electron docker golang bioinformatics vue docker-compose profile-search sequence-search mmseqs

Updated Oct 19, 2022
JavaScript

krzjoa / sciquence

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Time series & sequence processing in Python 🗠

python machine-learning time-series scikit-learn sequence-search dynamic-time-warping sequences

Updated Nov 15, 2021
Python

ggirelli / seq-lib-gg

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Base librarys for sequencing data analysis.

library analysis sequencing sequence-search sequence-to-sequence sequence base sequence-alignments sequence-alignment

Updated May 31, 2017
R

Abdelrahman-Hussain / sequenceSet

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implement Sequence setof the Btree.

files cpp sequence-search

Updated Jan 5, 2022
C++

TravisWheelerLab / bagel

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A framework for benchmarking sequence search tools

benchmarking bioinformatics sequence-search

Updated Oct 26, 2021
Python

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