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biomedical

Here are 185 public repositories matching this topic...

scispacy

allenai / scispacy

A full spaCy pipeline and models for scientific/biomedical documents.

nlp bioinformatics spacy biomedical custom-pipes scientific-documents

Updated Dec 10, 2022
Python

alibaba-research / ChineseBLUE

Chinese Biomedical Language Understanding Evaluation benchmark (ChineseBLUE)

benchmark natural-language-processing medical chinese biomedical bert

Updated Jun 25, 2021
Python

caufieldjh / awesome-bioie

🧫 A curated list of resources relevant to doing Biomedical Information Extraction (including BioNLP)

nlp natural-language-processing text-mining awesome bioinformatics information-extraction awesome-list biomedical medical-informatics biomedical-data biomedical-language

Updated Dec 15, 2022

vaticle / biograkn

BioGrakn Knowledge Graph

bioinformatics knowledge-graph knowledge-discovery biomedical biograkn

Updated Jan 15, 2021

MousaviSajad / SleepEEGNet

SleepEEGNet: Automated Sleep Stage Scoring with Sequence to Sequence Deep Learning Approach

deep-learning tensorflow cnn eeg rnn sequence-to-sequence biomedical biosignals sleep-stage-scoring

Updated Aug 27, 2021
Python

patverga / bran

Full abstract relation extraction from biological texts with bi-affine relation attention networks

tensorflow biomedical relation-extraction

Updated Jan 25, 2019
Python

dlab-berkeley / R-Deep-Learning

Workshop (6 hours): Deep learning in R using Keras. Building & training deep nets, image classification, transfer learning, text analysis, visualization

nlp deep-learning tensorflow keras biomedical cloudml

Updated Nov 1, 2022
R

medtype

svjan5 / medtype

MedType: Improving Medical Entity Linking with Semantic Type Prediction

deep-learning pytorch medical biomedical entity-linking state-of-the-art bert-as-service

Updated Feb 10, 2023
Python

SCIRun

SCIInstitute / SCIRun

SCIRun is a Problem Solving Environment, for modeling, simulation and visualization of scientific problems. This is version 5, the upgraded version of SCIRun v4.

visualization python open-source c-plus-plus cmake qt5 boost-libraries scientific-visualization scientific-computing mesh-generation linear-systems scientific-computations dataflow-programming inverse-problems forward-problem biomedical qt6

Updated Mar 7, 2023
C++

amzn / amazon-weak-ner-needle

Named Entity Recognition with Small Strongly Labeled and Large Weakly Labeled Data

weak-supervision ner biomedical bert weakly-supervised-learning distant-supervision biomedical-named-entity-recognition

Updated Mar 16, 2023
Python

grimmlab / MicrobiomeBestPracticeReview

Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing

bioinformatics pipeline best-practices assembly metagenomics microbiome biomedical microbiome-analysis amplicon-sequencing 16s-rrna microbiome-workflow

Updated Mar 2, 2022
Shell

som-shahlab / trove

Weakly supervised medical named entity classification

text-classification ontology weak-supervision ner biomedical umls bert weakly-supervised-learning pseudo-labeling learning-with-noisy-labels umls-metathesaurus

Updated Dec 23, 2022
Python

typedb-osi / typedb-bio

TypeDB Bio: Biomedical Knowledge Graph

bioinformatics knowledge-graph knowledge-discovery drug-discovery knowledge-base biomedical

Updated Mar 10, 2023
Python

GanjinZero / KeBioLM

Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]

nlp language-model biomedical pre-training

Updated Feb 6, 2023
Python

PlusLabNLP / GEANet-BioMed-Event-Extraction

Code for the paper Biomedical Event Extraction with Hierarchical Knowledge Graphs

natural-language-processing deep-learning event-extraction biomedical bert multitask-learning covid-19 cord-19

Updated Dec 8, 2022
Python

BorgwardtLab / S3M

A software package for statistically significant shapelet mining

time-series biomedical time-series-analysis shapelets biomedical-data-science time-series-analysis-tool significant-pattern-mining

Updated Dec 2, 2022
C++

farabio

tuttelikz / farabio

🤖 PyTorch toolkit for biomedical imaging ❤️

python deep-learning models pytorch datasets biomedical biomedical-imaging

Updated Aug 6, 2022
Python

BioCypher

saezlab / BioCypher

A unifying framework for biomedical research knowledge graphs

bioinformatics framework sql neo4j rdf postgresql ontology knowledge-graph biomedical rdfs

Updated Mar 16, 2023
Python

BMDSoftware / neji

Flexible and powerful platform for biomedical information extraction from text

java text-mining information-extraction named-entity-recognition biomedical concept-extraction

Updated Jul 20, 2017
JavaScript

dreji18 / Bio-Epidemiology-NER

Recognize bio-medical entities from a text corpus

nlp transformers epidemiology ner biomedical

Updated Feb 15, 2023
Python

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