#

sequencing

Here are 366 public repositories matching this topic...

google / deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

science machine-learning bioinformatics deep-learning genomics genome tensorflow ngs sequencing dna deep-neural-network deepvariant

Updated Oct 17, 2022
Python

bitfieldaudio / OTTO

Sampler, Sequencer, Multi-engine synth and effects - in a box! [WIP]

audio music raspberry-pi ui-design sequencing synthesizer synth audio-processing

Updated Jan 22, 2022
C++

OpenGene / fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

adapter quality bioinformatics quality-control filter ngs sequencing overlap splitting duplication umi trimming preprocessing filtering illumina fastq merging qc polyg

Updated Oct 11, 2022
C++

broadinstitute / gatk

Official code repository for GATK versions 4 and up

science bioinformatics spark genomics genome ngs sequencing dna gatk

Updated Dec 1, 2022
Java

galaxyproject / galaxy

Data intensive science for everyone.

docker science workflow bioinformatics pipeline genomics workflow-engine ngs sequencing dna usegalaxy hacktoberfest

Updated Dec 1, 2022
Python

hemberg-lab / scRNA.seq.course

Analysis of single cell RNA-seq data course

r course sequencing bookdown scrna-seq scrna-seq-analysis

Updated Apr 11, 2022
TeX

brentp / mosdepth

Sponsor

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

coverage nim genome sequencing depth wgs hacktoberfest exome nim-lang

Updated May 2, 2022
Nim

47degrees / fetch

Simple & Efficient data access for Scala and Scala.js

cats data monads scala concurrency sequencing parallelism scala-js monix data-fetching

Updated Nov 30, 2022
Scala

ideoforms / isobar

A Python library for creating and manipulating musical patterns, designed for use in algorithmic composition, generative music and sonification. Can be used to generate MIDI events, MIDI files, OSC messages, or custom events.

music midi composition sequencing algorithmic-composition

Updated Nov 23, 2022
Python

twbattaglia / RNAseq-workflow

A repository for setting up a RNAseq workflow

science workflow bioinformatics rna-seq pipeline sequencing genes

Updated Apr 10, 2017
R

chanzuckerberg / shasta

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads

nanopore assembly sequencing dna long-read pacbio de-novo

Updated Oct 13, 2022
C++

samtools / htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

java genomics ngs sequencing sam vcf dna java-api fasta bam cram

Updated Nov 29, 2022
Java

sanger-pathogens / Roary

Rapid large-scale prokaryote pan genome analysis

bioinformatics research genomics pathogen sequencing next-generation-sequencing bioinformatics-pipeline global-health infectious-diseases

Updated Apr 21, 2022
Perl

wurmlab / sequenceserver

Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

visualization javascript ruby bioinformatics genomics sequencing blast hacktoberfest sequence-alignment genomics-visualization

Updated Nov 19, 2022
JavaScript

r3fang / SnapATAC

Analysis Pipeline for Single Cell ATAC-seq

machine-learning-algorithms sequencing epigenetics bioinformatics-pipeline single-cell-analysis single-cell-atac-seq

Updated Mar 7, 2022
R

milaboratory / mixcr

MiXCR is a universal software for fast and accurate extraction and downstream analysis of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.

bioinformatics rna-seq sequencing immunology t-cell antibody t-cell-receptor rep-seq single-cell 10x

Updated Dec 1, 2022
Java

mercury

tmhglnd / mercury

A minimal and human-readable language and environment for the live coding of algorithmic electronic music.

language performance osc creative-coding sequencing live-coding livecoding visuals mercury algorithmic-composition sounds mercury-environment human-readable-language

Updated Nov 10, 2022
Max

OpenGene / AfterQC

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

bioinformatics quality-control ngs sequencing overlap error trimming filtering fastq qc adapter-trimming

Updated May 14, 2020
Python

biocommons / hgvs

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

bioinformatics genomics sequencing

Updated Nov 21, 2022
Python

sanger-pathogens / snp-sites

Finds SNP sites from a multi-FASTA alignment file

bioinformatics research genomics pathogen sequencing next-generation-sequencing bioinformatics-pipeline global-health infectious-diseases

Updated Dec 16, 2020
C

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