sequencing

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Sampler, Sequencer, Multi-engine synth and effects - in a box! [WIP]

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Official code repository for GATK versions 4 and up

Data intensive science for everyone.

Analysis of single cell RNA-seq data course

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Simple & Efficient data access for Scala and Scala.js

A Python library for creating and manipulating musical patterns, designed for use in algorithmic composition, generative music and sonification. Can be used to generate MIDI events, MIDI files, OSC messages, or custom events.

A repository for setting up a RNAseq workflow

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads

A Java API for high-throughput sequencing data (HTS) formats.

Rapid large-scale prokaryote pan genome analysis

Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

Analysis Pipeline for Single Cell ATAC-seq

MiXCR is a universal software for fast and accurate extraction and downstream analysis of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.

A minimal and human-readable language and environment for the live coding of algorithmic electronic music.

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation